Variant report

Variant	rs17376488
Chromosome Location	chr4:95226548-95226549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95220854..95223011-chr4:95224417..95226717,2	K562	blood:

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10000247	0.86[ASN][1000 genomes]
rs10008044	0.90[ASN][1000 genomes]
rs10016806	0.97[ASN][1000 genomes]
rs10023115	0.90[ASN][1000 genomes]
rs10024642	0.99[ASN][1000 genomes]
rs10030586	0.96[ASN][1000 genomes]
rs10034781	0.99[ASN][1000 genomes]
rs10433970	0.92[ASN][1000 genomes]
rs10516947	0.92[ASN][1000 genomes]
rs10516950	0.88[ASN][1000 genomes]
rs10856908	1.00[ASN][1000 genomes]
rs11097406	0.94[ASN][1000 genomes]
rs11097407	0.94[ASN][1000 genomes]
rs11097408	0.99[ASN][1000 genomes]
rs11097411	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097413	0.84[ASN][1000 genomes]
rs11722476	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11943926	0.94[ASN][1000 genomes]
rs12499309	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12501138	0.89[ASN][1000 genomes]
rs12505596	0.92[ASN][1000 genomes]
rs12510326	0.82[ASN][1000 genomes]
rs12511433	0.99[ASN][1000 genomes]
rs12513267	0.92[ASN][1000 genomes]
rs12643901	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12645192	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12646184	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13108619	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13111083	0.99[ASN][1000 genomes]
rs13112528	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13132963	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13135934	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13138688	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13142645	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13434570	0.99[ASN][1000 genomes]
rs13435702	0.99[ASN][1000 genomes]
rs1565062	0.99[ASN][1000 genomes]
rs17021463	1.00[ASN][1000 genomes]
rs17302300	0.90[ASN][1000 genomes]
rs17310266	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17310526	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17374832	0.92[ASN][1000 genomes]
rs17376404	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623135	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs183993	0.94[ASN][1000 genomes]
rs1876917	0.89[ASN][1000 genomes]
rs1876918	0.90[ASN][1000 genomes]
rs2016476	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2016483	0.90[ASN][1000 genomes]
rs2059605	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2087170	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2129595	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2171381	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171384	0.92[ASN][1000 genomes]
rs2276910	0.94[ASN][1000 genomes]
rs2289186	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2306802	0.86[EUR][1000 genomes]
rs2306803	0.84[EUR][1000 genomes]
rs2632399	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2632401	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2632405	0.96[ASN][1000 genomes]
rs2632410	0.96[ASN][1000 genomes]
rs2632411	0.96[ASN][1000 genomes]
rs2632417	0.94[ASN][1000 genomes]
rs2664871	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2664872	0.96[ASN][1000 genomes]
rs2664880	0.96[ASN][1000 genomes]
rs2664881	0.96[ASN][1000 genomes]
rs2664892	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2664894	0.97[ASN][1000 genomes]
rs282447	0.95[ASN][1000 genomes]
rs282448	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs282449	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs282450	0.96[ASN][1000 genomes]
rs28403447	0.87[ASN][1000 genomes]
rs28408270	0.90[ASN][1000 genomes]
rs28469860	0.87[ASN][1000 genomes]
rs2865343	0.92[ASN][1000 genomes]
rs2865344	0.92[ASN][1000 genomes]
rs2865345	0.97[ASN][1000 genomes]
rs2865352	0.85[ASN][1000 genomes]
rs28696050	0.92[ASN][1000 genomes]
rs28815470	0.90[ASN][1000 genomes]
rs2883	0.97[ASN][1000 genomes]
rs2902979	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3106133	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3106134	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3106135	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3106136	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3113862	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3113863	0.96[ASN][1000 genomes]
rs34145031	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34383543	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34396188	0.87[EUR][1000 genomes]
rs34396894	0.90[ASN][1000 genomes]
rs34465979	0.88[ASN][1000 genomes]
rs34711938	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35361491	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35670996	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35685585	0.81[AMR][1000 genomes]
rs35718240	0.87[EUR][1000 genomes]
rs35995707	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4235050	0.97[ASN][1000 genomes]
rs4438731	0.90[ASN][1000 genomes]
rs4558832	0.93[ASN][1000 genomes]
rs4560373	0.92[ASN][1000 genomes]
rs4692999	0.86[ASN][1000 genomes]
rs4693000	0.86[ASN][1000 genomes]
rs4693003	0.96[ASN][1000 genomes]
rs4693004	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4693375	0.94[ASN][1000 genomes]
rs4693377	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4693378	0.99[ASN][1000 genomes]
rs4693381	0.99[ASN][1000 genomes]
rs56197713	0.86[ASN][1000 genomes]
rs60428594	0.90[ASN][1000 genomes]
rs61004493	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61069704	0.89[ASN][1000 genomes]
rs61514245	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62320439	0.84[ASN][1000 genomes]
rs6532469	0.91[ASN][1000 genomes]
rs6532472	0.92[ASN][1000 genomes]
rs6532476	0.99[ASN][1000 genomes]
rs66581998	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67552174	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6817795	0.92[ASN][1000 genomes]
rs6821438	0.90[ASN][1000 genomes]
rs6821638	0.89[ASN][1000 genomes]
rs6823404	0.97[ASN][1000 genomes]
rs6840674	0.98[ASN][1000 genomes]
rs6841121	1.00[ASN][1000 genomes]
rs6855358	0.84[ASN][1000 genomes]
rs6857967	0.92[ASN][1000 genomes]
rs6858265	0.90[ASN][1000 genomes]
rs6858342	0.92[ASN][1000 genomes]
rs722486	0.90[ASN][1000 genomes]
rs72665608	0.88[ASN][1000 genomes]
rs72665629	0.92[ASN][1000 genomes]
rs72665658	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7435106	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7437089	0.83[ASN][1000 genomes]
rs7439869	0.99[ASN][1000 genomes]
rs7442254	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7654565	0.92[ASN][1000 genomes]
rs7654919	0.94[ASN][1000 genomes]
rs7657789	0.99[ASN][1000 genomes]
rs7669168	0.92[ASN][1000 genomes]
rs767657	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7678054	0.89[ASN][1000 genomes]
rs7680953	0.84[ASN][1000 genomes]
rs7685121	0.99[ASN][1000 genomes]
rs7697827	0.99[ASN][1000 genomes]
rs8026	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8336	0.99[ASN][1000 genomes]
rs901615	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9307136	0.94[ASN][1000 genomes]
rs9307137	0.92[ASN][1000 genomes]
rs9884209	0.99[ASN][1000 genomes]
rs9884431	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:95208200-95227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:95208800-95227200	Weak transcription	Left Ventricle	heart
4	chr4:95210000-95228600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:95212800-95228800	Weak transcription	A549	lung
6	chr4:95214200-95226600	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:95214200-95226800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:95214200-95226800	Weak transcription	Osteobl	bone
9	chr4:95214200-95227600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:95214400-95226800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:95214400-95227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:95214400-95227600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:95217200-95227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:95220600-95228600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:95224800-95229200	Enhancers	HSMM	muscle
16	chr4:95225000-95228200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:95225400-95227400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:95225800-95226800	Enhancers	HSMMtube	muscle
19	chr4:95225800-95227400	Enhancers	Fetal Heart	heart
20	chr4:95226000-95226600	Weak transcription	Stomach Mucosa	stomach
21	chr4:95226000-95229000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr4:95226400-95227200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:95226400-95227200	Enhancers	Duodenum Mucosa	Duodenum
24	chr4:95226400-95228800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:95226400-95228800	Enhancers	K562	blood

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