Variant report

Variant	rs2664892
Chromosome Location	chr4:95154186-95154187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95151162..95153621-chr4:95153761..95157182,3	MCF-7	breast:

Extended variants
information (count: 167 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10000247	0.83[ASN][1000 genomes]
rs10008044	0.91[ASN][1000 genomes]
rs10016806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10023115	0.91[ASN][1000 genomes]
rs10024642	0.96[ASN][1000 genomes]
rs10030586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10034781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10433970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[ASN][1000 genomes]
rs10516947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10516950	0.84[ASN][1000 genomes]
rs10856908	0.96[ASN][1000 genomes]
rs10856909	0.88[JPT][hapmap]
rs11097406	0.98[ASN][1000 genomes]
rs11097407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[ASN][1000 genomes]
rs11097408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11097411	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097413	0.80[ASN][1000 genomes]
rs11097417	0.88[JPT][hapmap]
rs11722476	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11727030	0.88[JPT][hapmap]
rs11943926	0.95[ASN][1000 genomes]
rs12499309	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12501138	0.90[ASN][1000 genomes]
rs12505596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12510326	0.86[ASN][1000 genomes]
rs12511433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12513267	0.93[ASN][1000 genomes]
rs12643901	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12645192	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12646184	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13108619	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13111083	0.96[ASN][1000 genomes]
rs13112528	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13132963	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13135934	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13138688	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13142645	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13434570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13435702	0.96[ASN][1000 genomes]
rs1565062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17021463	0.96[ASN][1000 genomes]
rs17302300	0.91[ASN][1000 genomes]
rs17310266	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17310526	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17374832	0.93[ASN][1000 genomes]
rs17376404	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17376488	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17623135	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs183993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1876917	0.91[ASN][1000 genomes]
rs1876918	0.91[ASN][1000 genomes]
rs1991316	0.88[JPT][hapmap]
rs2016476	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2016483	0.86[ASN][1000 genomes]
rs2059605	0.84[ASN][1000 genomes]
rs2087170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2129595	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2171381	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2171384	0.93[ASN][1000 genomes]
rs2276910	0.95[ASN][1000 genomes]
rs2289186	0.83[ASN][1000 genomes]
rs2306802	0.89[EUR][1000 genomes]
rs2306803	0.91[EUR][1000 genomes]
rs2632399	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2632401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2632405	0.96[ASN][1000 genomes]
rs2632410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2632411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2632417	0.95[ASN][1000 genomes]
rs2632423	0.90[EUR][1000 genomes]
rs2664871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2664872	0.96[ASN][1000 genomes]
rs2664880	0.96[ASN][1000 genomes]
rs2664881	0.96[ASN][1000 genomes]
rs2664894	0.98[ASN][1000 genomes]
rs282447	0.96[ASN][1000 genomes]
rs282448	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs282449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs282450	0.96[ASN][1000 genomes]
rs28403447	0.83[ASN][1000 genomes]
rs28408270	0.95[ASN][1000 genomes]
rs28469860	0.88[ASN][1000 genomes]
rs2865343	0.93[ASN][1000 genomes]
rs2865344	0.93[ASN][1000 genomes]
rs2865345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2865352	0.81[ASN][1000 genomes]
rs28696050	0.96[ASN][1000 genomes]
rs28815470	0.87[ASN][1000 genomes]
rs2883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2902979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3106133	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3106134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3106135	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3106136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113862	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3113863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34145031	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34383543	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34396188	0.88[EUR][1000 genomes]
rs34396894	0.91[ASN][1000 genomes]
rs34465979	0.84[ASN][1000 genomes]
rs34711938	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35361491	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35670996	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35718240	0.89[EUR][1000 genomes]
rs35995707	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4235050	0.98[ASN][1000 genomes]
rs4438731	0.91[ASN][1000 genomes]
rs4558832	0.94[ASN][1000 genomes]
rs4560373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4692999	0.91[ASN][1000 genomes]
rs4693000	0.90[ASN][1000 genomes]
rs4693003	0.96[ASN][1000 genomes]
rs4693004	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4693375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4693376	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4693377	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4693378	0.96[ASN][1000 genomes]
rs4693381	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs56197713	0.88[ASN][1000 genomes]
rs60428594	0.93[ASN][1000 genomes]
rs61004493	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61069704	0.91[ASN][1000 genomes]
rs61514245	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62320439	0.80[ASN][1000 genomes]
rs6532469	0.92[ASN][1000 genomes]
rs6532472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6532476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs66581998	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67552174	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6817795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6821438	0.91[ASN][1000 genomes]
rs6821638	0.90[ASN][1000 genomes]
rs6823404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6840674	0.96[ASN][1000 genomes]
rs6841121	0.96[ASN][1000 genomes]
rs6855358	0.80[ASN][1000 genomes]
rs6857967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6858265	0.91[ASN][1000 genomes]
rs6858342	0.93[ASN][1000 genomes]
rs722486	0.91[ASN][1000 genomes]
rs72665608	0.89[ASN][1000 genomes]
rs72665629	0.93[ASN][1000 genomes]
rs72665658	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7435106	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7437089	0.84[ASN][1000 genomes]
rs7438414	0.88[JPT][hapmap]
rs7439869	0.85[CHB][hapmap];0.84[JPT][hapmap];0.96[ASN][1000 genomes]
rs7442254	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7654565	0.93[ASN][1000 genomes]
rs7654919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7657789	0.96[ASN][1000 genomes]
rs7669168	0.93[ASN][1000 genomes]
rs767657	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7678054	0.91[ASN][1000 genomes]
rs7680953	0.85[ASN][1000 genomes]
rs7685121	0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs7697827	0.96[ASN][1000 genomes]
rs8026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs901615	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9307136	0.95[ASN][1000 genomes]
rs9307137	0.93[ASN][1000 genomes]
rs9884209	0.96[ASN][1000 genomes]
rs9884431	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv1850963	chr4:95146281-95175682	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95129800-95161800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:95130000-95176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:95130200-95162600	Weak transcription	Pancreas	Pancrea
4	chr4:95130200-95162600	Weak transcription	Small Intestine	intestine
5	chr4:95130200-95164000	Weak transcription	Spleen	Spleen
6	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
7	chr4:95130200-95194000	Weak transcription	Gastric	stomach
8	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
9	chr4:95131200-95164400	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:95131600-95157200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:95131800-95161600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:95131800-95169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:95134800-95162400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:95134800-95162800	Weak transcription	Hela-S3	cervix
16	chr4:95135200-95162600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:95135200-95162800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:95135800-95160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:95136400-95157600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:95136600-95164800	Weak transcription	Fetal Brain Male	brain
21	chr4:95136600-95174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:95136800-95162600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:95137400-95162400	Weak transcription	Ovary	ovary
24	chr4:95137400-95162600	Weak transcription	Thymus	Thymus
25	chr4:95137400-95162800	Weak transcription	Psoas Muscle	Psoas
26	chr4:95137600-95162600	Weak transcription	Aorta	Aorta
27	chr4:95138000-95161400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr4:95138200-95162400	Weak transcription	HSMMtube	muscle
29	chr4:95138400-95164200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:95138800-95161600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:95140200-95167000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:95141000-95164400	Weak transcription	A549	lung
34	chr4:95141200-95157000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:95141600-95162200	Weak transcription	Fetal Brain Female	brain
36	chr4:95142000-95159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:95142200-95164200	Weak transcription	NHLF	lung
38	chr4:95142800-95160800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:95143400-95162200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr4:95145400-95175000	Strong transcription	Dnd41	blood
41	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:95146600-95175800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:95147800-95156000	Strong transcription	Primary T cells from cord blood	blood
46	chr4:95147800-95156200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:95147800-95168400	Strong transcription	Fetal Thymus	thymus
48	chr4:95148000-95169400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:95148200-95154800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:95148200-95180800	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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