Variant report

Variant	rs3106134
Chromosome Location	chr4:95128091-95128092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs10008044	0.95[ASN][1000 genomes]
rs10016806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10023115	0.95[ASN][1000 genomes]
rs10024642	0.90[ASN][1000 genomes]
rs10030586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10034781	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10433970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10516947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10856908	0.89[ASN][1000 genomes]
rs10856909	0.89[JPT][hapmap]
rs11097406	0.95[ASN][1000 genomes]
rs11097407	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11097408	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11097411	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11097417	0.89[JPT][hapmap]
rs11722476	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11727030	0.83[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs11943926	0.95[ASN][1000 genomes]
rs12499309	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12501138	0.93[ASN][1000 genomes]
rs12505596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12510326	0.89[ASN][1000 genomes]
rs12511433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12513267	0.97[ASN][1000 genomes]
rs12643901	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645192	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12646184	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13108619	0.80[EUR][1000 genomes]
rs13111083	0.90[ASN][1000 genomes]
rs13112528	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13132963	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13135934	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13142645	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13434570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13435702	0.90[ASN][1000 genomes]
rs1565062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17021463	0.89[ASN][1000 genomes]
rs17302300	0.95[ASN][1000 genomes]
rs17310266	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17310526	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17374832	0.97[ASN][1000 genomes]
rs17376404	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17376488	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17623135	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1828324	0.83[ASN][1000 genomes]
rs183993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1876917	0.95[ASN][1000 genomes]
rs1876918	0.95[ASN][1000 genomes]
rs1991316	0.83[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap]
rs2087170	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2129595	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2171381	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2171384	0.97[ASN][1000 genomes]
rs2276910	0.95[ASN][1000 genomes]
rs2306802	0.81[CEU][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs2306803	0.88[EUR][1000 genomes]
rs2632399	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2632401	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2632405	0.93[ASN][1000 genomes]
rs2632410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2632411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2632412	0.85[GIH][hapmap]
rs2632417	0.95[ASN][1000 genomes]
rs2632423	0.93[EUR][1000 genomes]
rs2664871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2664872	0.93[ASN][1000 genomes]
rs2664880	0.93[ASN][1000 genomes]
rs2664881	0.93[ASN][1000 genomes]
rs2664892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2664894	0.91[ASN][1000 genomes]
rs282447	0.92[ASN][1000 genomes]
rs282448	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs282449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs282450	0.93[ASN][1000 genomes]
rs28408270	0.98[ASN][1000 genomes]
rs28469860	0.91[ASN][1000 genomes]
rs2865343	0.97[ASN][1000 genomes]
rs2865344	0.97[ASN][1000 genomes]
rs2865345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2865353	0.80[CEU][hapmap]
rs28696050	0.96[ASN][1000 genomes]
rs28815470	0.84[ASN][1000 genomes]
rs2883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2902979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3106133	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3106135	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3106136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3113862	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3113863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs34145031	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34383543	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34396188	0.85[EUR][1000 genomes]
rs34396894	0.95[ASN][1000 genomes]
rs34711938	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35361491	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35670996	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35718240	0.86[EUR][1000 genomes]
rs35995707	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4235050	0.91[ASN][1000 genomes]
rs4438731	0.95[ASN][1000 genomes]
rs4558832	0.91[ASN][1000 genomes]
rs4560373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4692999	0.94[ASN][1000 genomes]
rs4693000	0.93[ASN][1000 genomes]
rs4693003	0.93[ASN][1000 genomes]
rs4693004	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4693375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4693376	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4693377	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4693378	0.90[ASN][1000 genomes]
rs4693381	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs56197713	0.91[ASN][1000 genomes]
rs60428594	0.96[ASN][1000 genomes]
rs61004493	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61069704	0.95[ASN][1000 genomes]
rs61514245	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532469	0.96[ASN][1000 genomes]
rs6532472	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6532476	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs66581998	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67552174	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6817795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6821438	0.95[ASN][1000 genomes]
rs6821638	0.94[ASN][1000 genomes]
rs6823404	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6826671	0.83[GIH][hapmap];0.87[MEX][hapmap]
rs6840674	0.89[ASN][1000 genomes]
rs6841121	0.89[ASN][1000 genomes]
rs6857967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6858265	0.95[ASN][1000 genomes]
rs6858342	0.97[ASN][1000 genomes]
rs722486	0.95[ASN][1000 genomes]
rs72665608	0.92[ASN][1000 genomes]
rs72665629	0.97[ASN][1000 genomes]
rs72665658	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs728989	0.86[YRI][hapmap]
rs7435106	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7437089	0.87[ASN][1000 genomes]
rs7438414	0.83[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap]
rs7439869	0.86[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs7442254	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7654565	0.97[ASN][1000 genomes]
rs7654919	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7657789	0.90[ASN][1000 genomes]
rs7669168	0.97[ASN][1000 genomes]
rs767657	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7678054	0.95[ASN][1000 genomes]
rs7680953	0.91[ASN][1000 genomes]
rs7685121	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7697827	0.90[ASN][1000 genomes]
rs8026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8336	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs901615	0.81[AMR][1000 genomes]
rs9307136	0.95[ASN][1000 genomes]
rs9307137	0.93[ASN][1000 genomes]
rs9884209	0.90[ASN][1000 genomes]
rs9884431	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95119800-95128600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:95127800-95128200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr4:95127800-95128200	Enhancers	Fetal Muscle Trunk	muscle
4	chr4:95127800-95128200	Enhancers	Fetal Muscle Leg	muscle
5	chr4:95128000-95128200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:95128000-95128200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:95128000-95128200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:95128000-95128200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr4:95128000-95128200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr4:95128000-95128200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:95128000-95128200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:95128000-95128200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:95128000-95128200	Enhancers	Brain Anterior Caudate	brain
14	chr4:95128000-95128200	Enhancers	Brain Germinal Matrix	brain
15	chr4:95128000-95128200	Enhancers	Brain Substantia Nigra	brain
16	chr4:95128000-95128200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr4:95128000-95128200	Enhancers	Osteobl	bone
18	chr4:95128000-95128400	Enhancers	Primary B cells from peripheral blood	blood
19	chr4:95128000-95128400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:95128000-95128400	Flanking Active TSS	Dnd41	blood
21	chr4:95128000-95128600	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr4:95128000-95128800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr4:95128000-95129400	Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr4:95128000-95129400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:95128000-95129600	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr4:95128000-95129600	Active TSS	Fetal Kidney	kidney
27	chr4:95128000-95129600	Active TSS	K562	blood
28	chr4:95128000-95129800	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr4:95128000-95129800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:95128000-95129800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:95128000-95129800	Active TSS	Stomach Smooth Muscle	stomach
32	chr4:95128000-95129800	Active TSS	GM12878-XiMat	blood
33	chr4:95128000-95130000	Active TSS	Fetal Brain Male	brain

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