Variant report

Variant	rs10433970
Chromosome Location	chr4:95134165-95134166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:94760735..94763109-chr4:95132947..95134725,2	K562	blood:
2	chr4:95132907..95134525-chr4:95158211..95160242,2	K562	blood:
3	chr4:95133025..95135753-chr4:95158742..95161544,2	K562	blood:

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10008044	0.95[ASN][1000 genomes]
rs10016806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10023115	0.95[ASN][1000 genomes]
rs10024642	0.93[ASN][1000 genomes]
rs10030586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10034781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10516947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10516950	0.81[ASN][1000 genomes]
rs10856908	0.92[ASN][1000 genomes]
rs10856909	0.88[JPT][hapmap]
rs11097406	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11097411	0.92[ASN][1000 genomes]
rs11097417	0.88[JPT][hapmap]
rs11722476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11724791	0.87[EUR][1000 genomes]
rs11727030	0.88[JPT][hapmap]
rs11943926	0.98[ASN][1000 genomes]
rs12499309	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12501138	0.93[ASN][1000 genomes]
rs12501826	0.87[EUR][1000 genomes]
rs12502310	0.82[EUR][1000 genomes]
rs12505596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12510326	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12511433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12513267	0.96[ASN][1000 genomes]
rs12643901	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12645192	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12646184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13108619	0.83[ASN][1000 genomes]
rs13111083	0.93[ASN][1000 genomes]
rs13112528	0.93[ASN][1000 genomes]
rs13132963	0.90[ASN][1000 genomes]
rs13135934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13142645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13434570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13435702	0.93[ASN][1000 genomes]
rs1565062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1605923	0.85[EUR][1000 genomes]
rs17021364	0.83[EUR][1000 genomes]
rs17021463	0.92[ASN][1000 genomes]
rs17302300	0.95[ASN][1000 genomes]
rs17310266	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17310526	0.90[ASN][1000 genomes]
rs17374832	0.96[ASN][1000 genomes]
rs17376404	0.92[ASN][1000 genomes]
rs17376488	0.92[ASN][1000 genomes]
rs17623135	0.91[ASN][1000 genomes]
rs1828324	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs183993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1876917	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1876918	0.95[ASN][1000 genomes]
rs1991316	0.88[JPT][hapmap]
rs2016476	0.81[ASN][1000 genomes]
rs2016483	0.83[ASN][1000 genomes]
rs2059605	0.81[ASN][1000 genomes]
rs2087170	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs2129595	0.90[ASN][1000 genomes]
rs2169719	0.87[EUR][1000 genomes]
rs2171381	0.92[ASN][1000 genomes]
rs2171384	0.96[ASN][1000 genomes]
rs2199602	0.87[EUR][1000 genomes]
rs2276910	0.98[ASN][1000 genomes]
rs2632399	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2632401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[ASN][1000 genomes]
rs2632405	0.96[ASN][1000 genomes]
rs2632410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2632411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2632417	0.98[ASN][1000 genomes]
rs2664871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2664872	0.96[ASN][1000 genomes]
rs2664880	0.96[ASN][1000 genomes]
rs2664881	0.96[ASN][1000 genomes]
rs2664892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[ASN][1000 genomes]
rs2664894	0.95[ASN][1000 genomes]
rs282447	0.96[ASN][1000 genomes]
rs282448	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs282449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs282450	0.96[ASN][1000 genomes]
rs28398254	0.86[EUR][1000 genomes]
rs28403447	0.80[ASN][1000 genomes]
rs28408270	0.98[ASN][1000 genomes]
rs28417458	0.87[EUR][1000 genomes]
rs28469860	0.91[ASN][1000 genomes]
rs28474924	0.87[EUR][1000 genomes]
rs28613890	0.86[EUR][1000 genomes]
rs2865343	0.96[ASN][1000 genomes]
rs2865344	0.96[ASN][1000 genomes]
rs2865345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28696050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28815470	0.84[ASN][1000 genomes]
rs2883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2902979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3106133	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3106134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3106135	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3106136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3113862	0.98[ASN][1000 genomes]
rs3113863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34145031	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34383543	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs34396894	0.95[ASN][1000 genomes]
rs34465979	0.81[ASN][1000 genomes]
rs34711938	0.90[ASN][1000 genomes]
rs35361491	0.95[ASN][1000 genomes]
rs35670996	0.95[ASN][1000 genomes]
rs35995707	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4235050	0.95[ASN][1000 genomes]
rs4438731	0.95[ASN][1000 genomes]
rs4558832	0.94[ASN][1000 genomes]
rs4560373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4692999	0.94[ASN][1000 genomes]
rs4693000	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4693003	0.96[ASN][1000 genomes]
rs4693004	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4693375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4693376	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4693377	0.96[ASN][1000 genomes]
rs4693378	0.93[ASN][1000 genomes]
rs4693381	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs56161035	0.86[EUR][1000 genomes]
rs56197713	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60428594	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61004493	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61069704	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61514245	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6532469	0.96[ASN][1000 genomes]
rs6532472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6532476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs66581998	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs67552174	0.91[ASN][1000 genomes]
rs6817795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6821438	0.95[ASN][1000 genomes]
rs6821638	0.94[ASN][1000 genomes]
rs6823404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6840674	0.92[ASN][1000 genomes]
rs6841121	0.92[ASN][1000 genomes]
rs6857967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6858265	0.95[ASN][1000 genomes]
rs6858342	0.96[ASN][1000 genomes]
rs722486	0.95[ASN][1000 genomes]
rs72663782	0.84[EUR][1000 genomes]
rs72663785	0.87[EUR][1000 genomes]
rs72663787	0.87[EUR][1000 genomes]
rs72663802	0.87[EUR][1000 genomes]
rs72665608	0.92[ASN][1000 genomes]
rs72665629	0.96[ASN][1000 genomes]
rs72665658	0.98[ASN][1000 genomes]
rs7435106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7437089	0.87[ASN][1000 genomes]
rs7438414	0.88[JPT][hapmap]
rs7439869	0.85[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs7442254	0.91[ASN][1000 genomes]
rs7654565	0.96[ASN][1000 genomes]
rs7654919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7657789	0.93[ASN][1000 genomes]
rs7669168	0.96[ASN][1000 genomes]
rs767657	0.81[ASN][1000 genomes]
rs7678054	0.95[ASN][1000 genomes]
rs7680953	0.88[ASN][1000 genomes]
rs7685121	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7697827	0.93[ASN][1000 genomes]
rs8026	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs8336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs901615	0.81[ASN][1000 genomes]
rs9307136	0.98[ASN][1000 genomes]
rs9307137	0.96[ASN][1000 genomes]
rs9884209	0.93[ASN][1000 genomes]
rs9884431	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95129800-95137200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95129800-95137200	Weak transcription	Aorta	Aorta
3	chr4:95129800-95139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:95129800-95161800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:95130000-95134200	Weak transcription	Ovary	ovary
6	chr4:95130000-95135400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:95130000-95137600	Strong transcription	Fetal Muscle Trunk	muscle
8	chr4:95130000-95141600	Weak transcription	Esophagus	oesophagus
9	chr4:95130000-95148000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:95130000-95176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:95130200-95134400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:95130200-95134400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:95130200-95135200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr4:95130200-95136200	Weak transcription	Stomach Mucosa	stomach
15	chr4:95130200-95138400	Strong transcription	Fetal Thymus	thymus
16	chr4:95130200-95162600	Weak transcription	Pancreas	Pancrea
17	chr4:95130200-95162600	Weak transcription	Small Intestine	intestine
18	chr4:95130200-95164000	Weak transcription	Spleen	Spleen
19	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
20	chr4:95130200-95194000	Weak transcription	Gastric	stomach
21	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
22	chr4:95130400-95134200	Weak transcription	Brain Anterior Caudate	brain
23	chr4:95130400-95134400	Weak transcription	HSMMtube	muscle
24	chr4:95130400-95152000	Weak transcription	Brain Angular Gyrus	brain
25	chr4:95130600-95134400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:95130600-95143200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:95130600-95151600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:95131000-95135400	Strong transcription	K562	blood
29	chr4:95131000-95136600	Strong transcription	NHLF	lung
30	chr4:95131000-95138000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:95131000-95138000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:95131000-95138600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:95131200-95135800	Strong transcription	Placenta	Placenta
34	chr4:95131200-95136200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:95131200-95138000	Strong transcription	HSMM	muscle
36	chr4:95131200-95138600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:95131200-95143800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:95131200-95164400	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:95131400-95135600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr4:95131400-95136000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr4:95131400-95136400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:95131400-95136400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:95131400-95137000	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr4:95131400-95138000	Strong transcription	Osteobl	bone
45	chr4:95131400-95142000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr4:95131400-95143600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:95131400-95143800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:95131400-95143800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:95131600-95136200	Strong transcription	Fetal Intestine Large	intestine
50	chr4:95131600-95136800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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