Variant report

Variant	rs1828324
Chromosome Location	chr4:95087248-95087249
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10008044	0.86[ASN][1000 genomes]
rs10023115	0.86[ASN][1000 genomes]
rs10030586	0.82[ASN][1000 genomes]
rs10433970	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10516947	0.85[ASN][1000 genomes]
rs11097406	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11097407	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11724791	0.92[EUR][1000 genomes]
rs11943926	0.83[ASN][1000 genomes]
rs12501138	0.85[ASN][1000 genomes]
rs12501826	0.91[EUR][1000 genomes]
rs12502310	0.87[EUR][1000 genomes]
rs12502343	0.80[EUR][1000 genomes]
rs12505596	0.85[ASN][1000 genomes]
rs12510326	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12513267	0.85[ASN][1000 genomes]
rs12643901	0.81[ASN][1000 genomes]
rs1605923	0.90[EUR][1000 genomes]
rs17021364	0.87[EUR][1000 genomes]
rs17302300	0.83[ASN][1000 genomes]
rs17374832	0.85[ASN][1000 genomes]
rs183993	0.83[ASN][1000 genomes]
rs1876917	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1876918	0.86[ASN][1000 genomes]
rs2169719	0.91[EUR][1000 genomes]
rs2171384	0.85[ASN][1000 genomes]
rs2199602	0.91[EUR][1000 genomes]
rs2276910	0.83[ASN][1000 genomes]
rs2632401	0.81[ASN][1000 genomes]
rs2632405	0.82[ASN][1000 genomes]
rs2632410	0.82[ASN][1000 genomes]
rs2632411	0.82[ASN][1000 genomes]
rs2632417	0.83[ASN][1000 genomes]
rs2664871	0.81[ASN][1000 genomes]
rs2664872	0.82[ASN][1000 genomes]
rs2664880	0.82[ASN][1000 genomes]
rs2664881	0.82[ASN][1000 genomes]
rs282447	0.81[ASN][1000 genomes]
rs282449	0.81[ASN][1000 genomes]
rs282450	0.82[ASN][1000 genomes]
rs28398254	0.92[EUR][1000 genomes]
rs28408270	0.85[ASN][1000 genomes]
rs28417458	0.93[EUR][1000 genomes]
rs28474924	0.92[EUR][1000 genomes]
rs28613890	0.92[EUR][1000 genomes]
rs2865343	0.85[ASN][1000 genomes]
rs2865344	0.85[ASN][1000 genomes]
rs28696050	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3106133	0.81[ASN][1000 genomes]
rs3106134	0.83[ASN][1000 genomes]
rs3106135	0.81[ASN][1000 genomes]
rs3113862	0.81[ASN][1000 genomes]
rs3113863	0.82[ASN][1000 genomes]
rs34396894	0.86[ASN][1000 genomes]
rs4438731	0.86[ASN][1000 genomes]
rs4560373	0.85[ASN][1000 genomes]
rs4692999	0.81[ASN][1000 genomes]
rs4693000	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4693003	0.82[ASN][1000 genomes]
rs4693375	0.83[ASN][1000 genomes]
rs56161035	0.91[EUR][1000 genomes]
rs56197713	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60428594	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61069704	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6532469	0.84[ASN][1000 genomes]
rs6532472	0.85[ASN][1000 genomes]
rs6817795	0.85[ASN][1000 genomes]
rs6821438	0.86[ASN][1000 genomes]
rs6821638	0.86[ASN][1000 genomes]
rs6857967	0.85[ASN][1000 genomes]
rs6858265	0.83[ASN][1000 genomes]
rs6858342	0.85[ASN][1000 genomes]
rs722486	0.86[ASN][1000 genomes]
rs72663782	0.89[EUR][1000 genomes]
rs72663785	0.91[EUR][1000 genomes]
rs72663787	0.91[EUR][1000 genomes]
rs72663802	0.91[EUR][1000 genomes]
rs72665608	0.84[ASN][1000 genomes]
rs72665629	0.85[ASN][1000 genomes]
rs72665658	0.81[ASN][1000 genomes]
rs7654565	0.85[ASN][1000 genomes]
rs7654919	0.83[ASN][1000 genomes]
rs7669168	0.85[ASN][1000 genomes]
rs7678054	0.88[ASN][1000 genomes]
rs9307136	0.83[ASN][1000 genomes]
rs9307137	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95085200-95089800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr4:95086000-95089000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:95086800-95088600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:95086800-95089800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:95087000-95087400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:95087000-95088200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:95087200-95088400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:95087200-95089600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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