Variant report

Variant	rs17021364
Chromosome Location	chr4:95047893-95047894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:94712445..94713412-chr4:95047150..95048494,9	MCF-7	breast:
2	chr4:94712445..94713368-chr4:95047510..95048534,4	MCF-7	breast:
3	chr4:94712548..94713256-chr4:95047502..95048048,2	K562	blood:
4	chr4:94818194..94819480-chr4:95047856..95049178,6	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10016806	0.83[JPT][hapmap]
rs10030586	0.83[JPT][hapmap]
rs10034781	0.83[JPT][hapmap]
rs10433970	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs10516947	0.83[JPT][hapmap]
rs11097406	0.82[EUR][1000 genomes]
rs11097407	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs11097408	0.83[JPT][hapmap]
rs11722476	0.83[JPT][hapmap]
rs11724791	0.81[EUR][1000 genomes]
rs12499309	0.89[JPT][hapmap]
rs12501826	0.80[EUR][1000 genomes]
rs12505596	0.83[JPT][hapmap]
rs12510326	0.82[EUR][1000 genomes]
rs12511433	0.83[JPT][hapmap]
rs12646184	0.83[JPT][hapmap]
rs13135934	0.83[JPT][hapmap]
rs13142645	0.87[JPT][hapmap]
rs13434570	0.83[JPT][hapmap]
rs1565062	0.83[JPT][hapmap]
rs1588383	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1600086	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1605923	0.82[EUR][1000 genomes]
rs1828324	0.87[EUR][1000 genomes]
rs183993	0.83[JPT][hapmap]
rs1841926	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1876917	0.84[EUR][1000 genomes]
rs2087170	0.83[JPT][hapmap]
rs2169719	0.80[EUR][1000 genomes]
rs2199602	0.81[EUR][1000 genomes]
rs2632401	0.83[JPT][hapmap]
rs2632410	0.83[JPT][hapmap]
rs2632411	0.83[JPT][hapmap]
rs2664871	0.83[JPT][hapmap]
rs2664892	0.83[JPT][hapmap]
rs282449	0.83[JPT][hapmap]
rs28417458	0.80[EUR][1000 genomes]
rs28474924	0.81[EUR][1000 genomes]
rs2865345	0.83[JPT][hapmap]
rs28696050	0.84[EUR][1000 genomes]
rs28776332	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2883	0.83[JPT][hapmap]
rs2902979	0.83[JPT][hapmap]
rs3106134	0.83[JPT][hapmap]
rs3106136	0.83[JPT][hapmap]
rs3113863	0.83[JPT][hapmap]
rs4560373	0.83[JPT][hapmap]
rs4600885	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4693000	0.81[EUR][1000 genomes]
rs4693004	0.83[JPT][hapmap]
rs4693375	0.83[JPT][hapmap]
rs4693376	0.87[JPT][hapmap]
rs56161035	0.82[EUR][1000 genomes]
rs56197713	0.87[EUR][1000 genomes]
rs60428594	0.84[EUR][1000 genomes]
rs61069704	0.87[EUR][1000 genomes]
rs6532472	0.83[JPT][hapmap]
rs6532476	0.83[JPT][hapmap]
rs66638531	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6817795	0.88[JPT][hapmap]
rs6823404	0.83[JPT][hapmap]
rs6840757	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6857967	0.83[JPT][hapmap]
rs72663751	0.88[ASN][1000 genomes]
rs72663756	0.88[ASN][1000 genomes]
rs72663782	0.81[EUR][1000 genomes]
rs72663785	0.81[EUR][1000 genomes]
rs72663787	0.81[EUR][1000 genomes]
rs72663802	0.80[EUR][1000 genomes]
rs7435106	0.83[JPT][hapmap]
rs7654919	0.83[JPT][hapmap]
rs7682116	0.86[ASN][1000 genomes]
rs8026	0.84[JPT][hapmap]
rs8336	0.83[JPT][hapmap]
rs899133	0.95[ASN][1000 genomes]
rs899134	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879617	chr4:94980768-95055821	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv879620	chr4:95012684-95049123	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95047000-95054000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:95047800-95048000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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