Variant report

Variant	rs2902979
Chromosome Location	chr4:95177874-95177875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94712546..94713375-chr4:95177698..95178653,4	K562	blood:
2	chr4:95177237..95180032-chr4:95186366..95188850,2	MCF-7	breast:

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10000247	0.88[ASN][1000 genomes]
rs10008044	0.83[ASN][1000 genomes]
rs10016806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10023115	0.83[ASN][1000 genomes]
rs10024642	0.92[ASN][1000 genomes]
rs10030586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10034781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10433970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10516947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10856908	0.91[ASN][1000 genomes]
rs10856909	0.89[JPT][hapmap]
rs11097406	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11097407	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11097408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11097411	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097417	0.89[JPT][hapmap]
rs11722476	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11727030	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs11943926	0.87[ASN][1000 genomes]
rs12499309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12501138	0.82[ASN][1000 genomes]
rs12505596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12511433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12513267	0.85[ASN][1000 genomes]
rs12643901	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12645192	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12646184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13108619	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13111083	0.92[ASN][1000 genomes]
rs13112528	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13132963	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13135934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13142645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13434570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13435702	0.92[ASN][1000 genomes]
rs1565062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17021463	0.91[ASN][1000 genomes]
rs17302300	0.83[ASN][1000 genomes]
rs17310266	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17310526	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17374832	0.85[ASN][1000 genomes]
rs17376404	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17376488	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17623135	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs183993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1876917	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1876918	0.83[ASN][1000 genomes]
rs1991316	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs2016476	0.81[ASN][1000 genomes]
rs2016483	0.81[ASN][1000 genomes]
rs2087170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2129595	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2171381	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2171384	0.85[ASN][1000 genomes]
rs2276910	0.87[ASN][1000 genomes]
rs2306802	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs2306803	0.92[EUR][1000 genomes]
rs2632399	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2632401	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2632405	0.88[ASN][1000 genomes]
rs2632410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2632411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2632417	0.87[ASN][1000 genomes]
rs2632423	0.87[EUR][1000 genomes]
rs2664871	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2664872	0.88[ASN][1000 genomes]
rs2664880	0.88[ASN][1000 genomes]
rs2664881	0.88[ASN][1000 genomes]
rs2664892	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2664894	0.90[ASN][1000 genomes]
rs282447	0.87[ASN][1000 genomes]
rs282448	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs282449	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs282450	0.88[ASN][1000 genomes]
rs28408270	0.87[ASN][1000 genomes]
rs28469860	0.82[ASN][1000 genomes]
rs2865343	0.85[ASN][1000 genomes]
rs2865344	0.85[ASN][1000 genomes]
rs2865345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2865353	0.85[CEU][hapmap]
rs28696050	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28701470	0.80[ASN][1000 genomes]
rs28815470	0.84[ASN][1000 genomes]
rs2883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3106133	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3106134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3106135	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3106136	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3113862	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3113863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs34145031	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34383543	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34396188	0.93[EUR][1000 genomes]
rs34396894	0.83[ASN][1000 genomes]
rs34711938	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35361491	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35670996	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35718240	0.95[EUR][1000 genomes]
rs35995707	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4235050	0.90[ASN][1000 genomes]
rs4282187	0.82[CEU][hapmap]
rs4438731	0.83[ASN][1000 genomes]
rs4558832	0.91[ASN][1000 genomes]
rs4560373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4692999	0.83[ASN][1000 genomes]
rs4693000	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4693003	0.88[ASN][1000 genomes]
rs4693004	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4693375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4693376	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4693377	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4693378	0.92[ASN][1000 genomes]
rs4693381	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs56197713	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60428594	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61004493	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61069704	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61514245	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6532469	0.84[ASN][1000 genomes]
rs6532472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6532476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs66581998	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67552174	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6817795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6821438	0.83[ASN][1000 genomes]
rs6821638	0.83[ASN][1000 genomes]
rs6823404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6826671	0.82[CEU][hapmap]
rs6840674	0.91[ASN][1000 genomes]
rs6841121	0.91[ASN][1000 genomes]
rs6857967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6858265	0.83[ASN][1000 genomes]
rs6858342	0.85[ASN][1000 genomes]
rs722486	0.83[ASN][1000 genomes]
rs72665608	0.86[ASN][1000 genomes]
rs72665629	0.85[ASN][1000 genomes]
rs72665658	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7435106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7438414	0.82[CEU][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap]
rs7439869	0.86[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs7442254	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7654565	0.85[ASN][1000 genomes]
rs7654919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7657789	0.92[ASN][1000 genomes]
rs7669168	0.85[ASN][1000 genomes]
rs767657	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7678054	0.83[ASN][1000 genomes]
rs7685121	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7697827	0.92[ASN][1000 genomes]
rs8026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs901615	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9307136	0.87[ASN][1000 genomes]
rs9307137	0.85[ASN][1000 genomes]
rs9884209	0.92[ASN][1000 genomes]
rs9884431	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
2	chr4:95130200-95194000	Weak transcription	Gastric	stomach
3	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
4	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:95148200-95180800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:95152200-95202000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
13	chr4:95161400-95207000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:95162800-95192000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:95163000-95200200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:95163000-95210200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:95164400-95202800	Weak transcription	Pancreas	Pancrea
18	chr4:95164600-95200200	Weak transcription	Lung	lung
19	chr4:95164600-95200200	Weak transcription	Spleen	Spleen
20	chr4:95165000-95194200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr4:95165000-95198000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:95165400-95200000	Weak transcription	Fetal Brain Male	brain
23	chr4:95165400-95202800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:95166400-95183200	Weak transcription	Hela-S3	cervix
25	chr4:95167600-95200200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:95167800-95181400	Weak transcription	Fetal Intestine Small	intestine
27	chr4:95167800-95199800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr4:95167800-95200200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:95167800-95200200	Weak transcription	Fetal Stomach	stomach
30	chr4:95167800-95212800	Weak transcription	Esophagus	oesophagus
31	chr4:95168000-95214200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:95168200-95191800	Weak transcription	A549	lung
33	chr4:95168400-95193200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:95168600-95190800	Weak transcription	Aorta	Aorta
35	chr4:95168600-95198200	Weak transcription	Psoas Muscle	Psoas
36	chr4:95168800-95179600	Weak transcription	Fetal Heart	heart
37	chr4:95172600-95179400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:95172600-95198400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:95172600-95202000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:95173600-95178000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:95174400-95192200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:95174400-95193000	Weak transcription	HepG2	liver
43	chr4:95174400-95200000	Weak transcription	Fetal Kidney	kidney
44	chr4:95174400-95200200	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:95174600-95178800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr4:95174600-95186000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:95174600-95187200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:95174600-95194000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:95174600-95198000	Weak transcription	Brain Anterior Caudate	brain
50	chr4:95174600-95199200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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