Variant report

Variant	rs13108619
Chromosome Location	chr4:95201074-95201075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10000247	0.86[ASN][1000 genomes]
rs10016806	0.83[ASN][1000 genomes]
rs10024642	0.84[ASN][1000 genomes]
rs10030586	0.83[ASN][1000 genomes]
rs10034781	0.84[ASN][1000 genomes]
rs10433970	0.83[ASN][1000 genomes]
rs10856908	0.83[ASN][1000 genomes]
rs11097406	0.84[ASN][1000 genomes]
rs11097407	0.84[ASN][1000 genomes]
rs11097408	0.84[ASN][1000 genomes]
rs11097411	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11722476	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11943926	0.81[ASN][1000 genomes]
rs12499309	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12511433	0.84[ASN][1000 genomes]
rs12643901	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12645192	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12646184	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13111083	0.84[ASN][1000 genomes]
rs13112528	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13132963	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13135934	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13138688	0.80[AMR][1000 genomes]
rs13142645	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13434570	0.84[ASN][1000 genomes]
rs13435702	0.84[ASN][1000 genomes]
rs1565062	0.84[ASN][1000 genomes]
rs17021463	0.83[ASN][1000 genomes]
rs17310266	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17310526	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17376404	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17376488	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17623135	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs183993	0.81[ASN][1000 genomes]
rs2087170	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2129595	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2171381	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2276910	0.81[ASN][1000 genomes]
rs2632399	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2632401	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2632405	0.83[ASN][1000 genomes]
rs2632410	0.83[ASN][1000 genomes]
rs2632411	0.83[ASN][1000 genomes]
rs2632417	0.81[ASN][1000 genomes]
rs2664871	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2664872	0.83[ASN][1000 genomes]
rs2664880	0.83[ASN][1000 genomes]
rs2664881	0.83[ASN][1000 genomes]
rs2664892	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2664894	0.83[ASN][1000 genomes]
rs282447	0.82[ASN][1000 genomes]
rs282448	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs282449	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs282450	0.83[ASN][1000 genomes]
rs28408270	0.81[ASN][1000 genomes]
rs2865345	0.83[ASN][1000 genomes]
rs28696050	0.83[ASN][1000 genomes]
rs28701470	0.88[ASN][1000 genomes]
rs2883	0.83[ASN][1000 genomes]
rs2902979	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3106133	0.81[ASN][1000 genomes]
rs3106134	0.80[EUR][1000 genomes]
rs3106135	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3106136	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3113862	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3113863	0.83[ASN][1000 genomes]
rs34145031	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34383543	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34396188	0.80[EUR][1000 genomes]
rs34711938	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35361491	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35670996	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35995707	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4235050	0.83[ASN][1000 genomes]
rs4558832	0.85[ASN][1000 genomes]
rs4693003	0.83[ASN][1000 genomes]
rs4693004	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4693375	0.81[ASN][1000 genomes]
rs4693377	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693378	0.84[ASN][1000 genomes]
rs4693381	0.84[ASN][1000 genomes]
rs61004493	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61514245	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6532476	0.84[ASN][1000 genomes]
rs66581998	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67552174	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6823404	0.86[ASN][1000 genomes]
rs6840674	0.83[ASN][1000 genomes]
rs6841121	0.83[ASN][1000 genomes]
rs72665608	0.80[ASN][1000 genomes]
rs72665658	0.84[ASN][1000 genomes]
rs7435106	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7439869	0.84[ASN][1000 genomes]
rs7442254	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7654919	0.81[ASN][1000 genomes]
rs7657789	0.84[ASN][1000 genomes]
rs767657	0.84[EUR][1000 genomes]
rs7685121	0.84[ASN][1000 genomes]
rs7697827	0.84[ASN][1000 genomes]
rs8026	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8336	0.84[ASN][1000 genomes]
rs9307136	0.81[ASN][1000 genomes]
rs9884209	0.84[ASN][1000 genomes]
rs9884431	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv292335	chr4:95197059-95203357	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:95152200-95202000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
8	chr4:95161400-95207000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:95163000-95210200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:95164400-95202800	Weak transcription	Pancreas	Pancrea
11	chr4:95165400-95202800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:95167800-95212800	Weak transcription	Esophagus	oesophagus
13	chr4:95168000-95214200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:95172600-95202000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:95177000-95214000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:95185400-95213000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:95185800-95214400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:95186000-95206000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:95187800-95208800	Strong transcription	Liver	Liver
21	chr4:95189400-95212800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr4:95189400-95213800	Strong transcription	Dnd41	blood
23	chr4:95189600-95214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:95189800-95211600	Strong transcription	Fetal Thymus	thymus
25	chr4:95189800-95214400	Strong transcription	HSMM	muscle
26	chr4:95190600-95213000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:95190800-95208400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:95190800-95208800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:95190800-95211600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:95190800-95211800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:95191000-95211200	Strong transcription	Adipose Nuclei	Adipose
32	chr4:95191000-95211600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr4:95191000-95213000	Weak transcription	Aorta	Aorta
34	chr4:95191000-95213200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:95192000-95206800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:95192000-95207000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:95192000-95208800	Strong transcription	Placenta	Placenta
38	chr4:95192400-95209600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr4:95193400-95208600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr4:95193600-95204200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:95194200-95214400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:95194200-95215400	Weak transcription	Gastric	stomach
43	chr4:95195600-95204000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr4:95195800-95203000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:95195800-95205400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr4:95195800-95207800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr4:95196200-95201800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr4:95196200-95205200	Strong transcription	NHDF-Ad	bronchial
49	chr4:95196400-95210800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:95196600-95208200	Strong transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links