Variant report

Variant	rs13138688
Chromosome Location	chr6:77964585-77964586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10024642	0.81[ASN][1000 genomes]
rs10034781	0.81[ASN][1000 genomes]
rs10516950	0.89[ASN][1000 genomes]
rs10856908	0.82[ASN][1000 genomes]
rs11097408	0.81[ASN][1000 genomes]
rs11097411	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11097413	0.85[ASN][1000 genomes]
rs11097414	0.89[EUR][1000 genomes]
rs11722476	0.81[AMR][1000 genomes]
rs12499309	0.82[ASN][1000 genomes]
rs12511433	0.81[ASN][1000 genomes]
rs12643901	0.82[AMR][1000 genomes]
rs12645192	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12646184	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13108619	0.80[AMR][1000 genomes]
rs13111083	0.81[ASN][1000 genomes]
rs13112528	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13132963	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13135934	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13142645	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13434570	0.81[ASN][1000 genomes]
rs13435702	0.81[ASN][1000 genomes]
rs1344612	0.80[EUR][1000 genomes]
rs1426575	0.89[EUR][1000 genomes]
rs1565062	0.81[ASN][1000 genomes]
rs17021463	0.82[ASN][1000 genomes]
rs17021507	0.81[EUR][1000 genomes]
rs17310266	0.82[ASN][1000 genomes]
rs17310526	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17376404	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17376488	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17623135	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1991316	0.81[EUR][1000 genomes]
rs2016476	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2016483	0.91[ASN][1000 genomes]
rs2059605	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087170	0.82[ASN][1000 genomes]
rs2129595	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2171381	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289186	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2632399	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2632401	0.81[AMR][1000 genomes]
rs2664871	0.82[AMR][1000 genomes]
rs2664892	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs282448	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs282449	0.82[AMR][1000 genomes]
rs28403447	0.89[ASN][1000 genomes]
rs28408371	0.81[EUR][1000 genomes]
rs2865352	0.86[ASN][1000 genomes]
rs3106135	0.82[AMR][1000 genomes]
rs3106136	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3113862	0.81[AMR][1000 genomes]
rs34145031	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34383543	0.82[AMR][1000 genomes]
rs34465979	0.89[ASN][1000 genomes]
rs34711938	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35361491	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35670996	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35995707	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4282187	0.81[EUR][1000 genomes]
rs4693004	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4693377	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4693378	0.81[ASN][1000 genomes]
rs4693381	0.81[ASN][1000 genomes]
rs61004493	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61514245	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62320439	0.85[ASN][1000 genomes]
rs6532476	0.81[ASN][1000 genomes]
rs6532479	0.89[EUR][1000 genomes]
rs66581998	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs67552174	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6823404	0.82[ASN][1000 genomes]
rs6826671	0.81[EUR][1000 genomes]
rs6840674	0.80[ASN][1000 genomes]
rs6841121	0.82[ASN][1000 genomes]
rs6851128	0.88[EUR][1000 genomes]
rs724260	0.89[EUR][1000 genomes]
rs72665658	0.81[AMR][1000 genomes]
rs7435106	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7438414	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7439869	0.81[ASN][1000 genomes]
rs7657789	0.81[ASN][1000 genomes]
rs7657805	0.81[EUR][1000 genomes]
rs767657	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685121	0.81[ASN][1000 genomes]
rs7697827	0.81[ASN][1000 genomes]
rs8026	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8336	0.81[ASN][1000 genomes]
rs901615	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9884209	0.81[ASN][1000 genomes]
rs9884431	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77959800-77974600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:77962000-77968000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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