Variant report

Variant	rs62320439
Chromosome Location	chr4:95248721-95248722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95248410..95251790-chr4:95252473..95254073,3	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10015608	0.88[EUR][1000 genomes]
rs10016806	0.82[ASN][1000 genomes]
rs10024642	0.84[ASN][1000 genomes]
rs10028613	0.88[AMR][1000 genomes]
rs10030586	0.80[ASN][1000 genomes]
rs10034781	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10516950	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10856908	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10856909	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11097408	0.84[ASN][1000 genomes]
rs11097411	0.84[ASN][1000 genomes]
rs11097413	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097417	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12499309	0.82[ASN][1000 genomes]
rs12511433	0.84[ASN][1000 genomes]
rs12645192	0.80[ASN][1000 genomes]
rs12646184	0.82[ASN][1000 genomes]
rs13111083	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13112528	0.84[ASN][1000 genomes]
rs13132963	0.83[ASN][1000 genomes]
rs13135934	0.82[ASN][1000 genomes]
rs13138688	0.85[ASN][1000 genomes]
rs13142645	0.82[ASN][1000 genomes]
rs13434570	0.84[ASN][1000 genomes]
rs13435702	0.84[ASN][1000 genomes]
rs1565062	0.84[ASN][1000 genomes]
rs17021463	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17310266	0.82[ASN][1000 genomes]
rs17310526	0.83[ASN][1000 genomes]
rs17311008	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17376404	0.84[ASN][1000 genomes]
rs17376488	0.84[ASN][1000 genomes]
rs17623135	0.82[ASN][1000 genomes]
rs1965696	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2016476	0.92[ASN][1000 genomes]
rs2016483	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2059605	0.96[ASN][1000 genomes]
rs2087170	0.82[ASN][1000 genomes]
rs2129595	0.83[ASN][1000 genomes]
rs2171381	0.84[ASN][1000 genomes]
rs2289186	0.94[ASN][1000 genomes]
rs2632399	0.80[ASN][1000 genomes]
rs2632405	0.80[ASN][1000 genomes]
rs2632410	0.80[ASN][1000 genomes]
rs2632411	0.80[ASN][1000 genomes]
rs2664872	0.80[ASN][1000 genomes]
rs2664880	0.80[ASN][1000 genomes]
rs2664881	0.80[ASN][1000 genomes]
rs2664892	0.80[ASN][1000 genomes]
rs2664894	0.82[ASN][1000 genomes]
rs282450	0.80[ASN][1000 genomes]
rs28403447	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2865345	0.82[ASN][1000 genomes]
rs2865350	0.83[AMR][1000 genomes]
rs2865352	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2883	0.82[ASN][1000 genomes]
rs3106136	0.80[ASN][1000 genomes]
rs3113863	0.80[ASN][1000 genomes]
rs34145031	0.82[ASN][1000 genomes]
rs34181160	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34465979	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34711938	0.83[ASN][1000 genomes]
rs35361491	0.82[ASN][1000 genomes]
rs35670996	0.82[ASN][1000 genomes]
rs35995707	0.82[ASN][1000 genomes]
rs4235050	0.82[ASN][1000 genomes]
rs4693003	0.80[ASN][1000 genomes]
rs4693004	0.82[ASN][1000 genomes]
rs4693378	0.84[ASN][1000 genomes]
rs4693381	0.84[ASN][1000 genomes]
rs58796749	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59483091	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61004493	0.82[ASN][1000 genomes]
rs61514245	0.82[ASN][1000 genomes]
rs62320441	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62320444	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6532476	0.84[ASN][1000 genomes]
rs6823404	0.82[ASN][1000 genomes]
rs6840674	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6841121	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6847989	0.81[AMR][1000 genomes]
rs6851128	0.80[ASN][1000 genomes]
rs7435106	0.82[ASN][1000 genomes]
rs7439869	0.84[ASN][1000 genomes]
rs7657789	0.84[ASN][1000 genomes]
rs7672464	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7672527	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7672999	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs767657	0.92[ASN][1000 genomes]
rs7685121	0.84[ASN][1000 genomes]
rs7697827	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs8026	0.82[ASN][1000 genomes]
rs8336	0.84[ASN][1000 genomes]
rs901615	0.92[ASN][1000 genomes]
rs9884209	0.84[ASN][1000 genomes]
rs9884431	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95246400-95248800	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr4:95248000-95249000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr4:95248000-95249400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:95248200-95248800	ZNF genes & repeats	Aorta	Aorta
5	chr4:95248200-95248800	ZNF genes & repeats	Gastric	stomach
6	chr4:95248200-95249000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:95248200-95251000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr4:95248600-95249200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr4:95248600-95249400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:95248600-95249400	ZNF genes & repeats	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links