Variant report

Variant	rs2865350
Chromosome Location	chr4:95212813-95212814
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95211457..95212981-chr4:95222999..95224676,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10000247	0.82[EUR][1000 genomes]
rs10016806	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10024642	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10028613	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030586	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs10034781	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10856908	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11097408	1.00[CEU][hapmap];0.95[GIH][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11722476	0.84[GIH][hapmap]
rs12511433	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12646184	0.84[GIH][hapmap]
rs13111083	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13434570	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs13435702	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1509946	0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1565062	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17021463	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17309887	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs183993	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2087170	0.82[GIH][hapmap]
rs2276910	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2632401	0.84[GIH][hapmap]
rs2632405	0.88[EUR][1000 genomes]
rs2632410	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs2632411	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs2632412	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2632417	0.85[EUR][1000 genomes]
rs2664871	0.84[GIH][hapmap]
rs2664872	0.87[EUR][1000 genomes]
rs2664880	0.85[EUR][1000 genomes]
rs2664881	0.86[EUR][1000 genomes]
rs2664894	0.88[EUR][1000 genomes]
rs282447	0.84[EUR][1000 genomes]
rs282450	0.86[EUR][1000 genomes]
rs2865345	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs28815470	0.82[AMR][1000 genomes]
rs2883	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs3106134	0.84[GIH][hapmap]
rs3113863	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4235050	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs4558832	0.87[EUR][1000 genomes]
rs4693003	0.87[EUR][1000 genomes]
rs4693004	0.84[GIH][hapmap]
rs4693376	0.95[CEU][hapmap]
rs4693378	0.92[EUR][1000 genomes]
rs4693381	0.95[CEU][hapmap];0.95[GIH][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62320427	0.85[ASN][1000 genomes]
rs62320439	0.83[AMR][1000 genomes]
rs6532476	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6823404	1.00[CEU][hapmap];0.95[GIH][hapmap];0.92[EUR][1000 genomes]
rs6840674	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6841121	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6855358	0.89[EUR][1000 genomes]
rs7439869	0.95[CEU][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7657789	0.93[EUR][1000 genomes]
rs7676797	0.80[ASN][1000 genomes]
rs7685121	0.95[CEU][hapmap];0.95[GIH][hapmap];0.93[EUR][1000 genomes]
rs7697827	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8026	0.84[GIH][hapmap]
rs8336	1.00[CEU][hapmap];0.95[GIH][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9884209	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9884431	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
7	chr4:95168000-95214200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:95177000-95214000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:95185400-95213000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:95185800-95214400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:95189400-95213800	Strong transcription	Dnd41	blood
13	chr4:95189600-95214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:95189800-95214400	Strong transcription	HSMM	muscle
15	chr4:95190600-95213000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:95191000-95213000	Weak transcription	Aorta	Aorta
17	chr4:95191000-95213200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:95194200-95214400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:95194200-95215400	Weak transcription	Gastric	stomach
20	chr4:95197000-95213600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:95197000-95214400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:95197400-95214400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:95199800-95213200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:95200800-95213200	Weak transcription	Psoas Muscle	Psoas
25	chr4:95200800-95214000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:95201200-95213200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:95201200-95215000	Weak transcription	Lung	lung
28	chr4:95202400-95215800	Weak transcription	Brain Substantia Nigra	brain
29	chr4:95202400-95216400	Weak transcription	Fetal Brain Male	brain
30	chr4:95202600-95214800	Weak transcription	Hela-S3	cervix
31	chr4:95202800-95215800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:95203200-95213000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr4:95203200-95213000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr4:95204600-95214200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:95204600-95215000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr4:95204600-95215800	Weak transcription	Fetal Kidney	kidney
37	chr4:95204800-95214000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:95204800-95215600	Weak transcription	Brain Anterior Caudate	brain
39	chr4:95204800-95220000	Weak transcription	K562	blood
40	chr4:95205000-95215200	Weak transcription	Small Intestine	intestine
41	chr4:95205200-95215200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:95205400-95215600	Weak transcription	NHLF	lung
43	chr4:95205400-95225000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:95205800-95213200	Weak transcription	Right Ventricle	heart
45	chr4:95205800-95216000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:95205800-95216000	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:95205800-95216400	Weak transcription	HSMMtube	muscle
48	chr4:95206000-95213400	Weak transcription	Fetal Intestine Small	intestine
49	chr4:95206000-95215000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr4:95206000-95219800	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links