Variant report

Variant	rs1509946
Chromosome Location	chr4:95109078-95109079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94834970..94836520-chr4:95108822..95111523,2	K562	blood:
2	chr4:95108671..95111637-chr4:95128814..95130517,2	K562	blood:

Variant related genes	Relation type
ENSG00000163104	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10008044	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10018905	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10023115	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10024198	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10028613	0.83[ASN][1000 genomes]
rs10433969	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10516947	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11943926	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12501138	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12505596	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12513267	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13435702	0.84[AFR][1000 genomes]
rs1509945	0.90[EUR][1000 genomes]
rs1585651	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17302300	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17374832	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1876918	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2171384	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2632412	0.92[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs28408270	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28469860	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2865343	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2865344	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2865345	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2865350	0.83[ASN][1000 genomes]
rs34396894	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4438731	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4560373	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4692999	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4693374	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4693375	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6532469	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6532472	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6815207	0.85[EUR][1000 genomes]
rs6817795	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6821438	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6821638	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6857967	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6858265	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6858342	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs722486	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72665608	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72665629	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7437089	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7654565	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7654919	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7669168	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7676797	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7678054	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7680953	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8336	1.00[YRI][hapmap]
rs9307136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9307137	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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