Variant report
Variant | rs6815207 |
---|---|
Chromosome Location | chr4:95051894-95051895 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10008044 | 0.83[EUR][1000 genomes] |
rs10018905 | 0.88[EUR][1000 genomes] |
rs10023115 | 0.83[EUR][1000 genomes] |
rs10023582 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10024198 | 0.89[EUR][1000 genomes] |
rs10433969 | 0.88[EUR][1000 genomes] |
rs10516947 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
rs11943926 | 0.81[EUR][1000 genomes] |
rs12501138 | 0.82[EUR][1000 genomes] |
rs12505596 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
rs12505694 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12513267 | 0.81[EUR][1000 genomes] |
rs1472984 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1509945 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1509946 | 0.93[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes] |
rs1585651 | 0.89[EUR][1000 genomes] |
rs17374832 | 0.81[EUR][1000 genomes] |
rs1876918 | 0.82[EUR][1000 genomes] |
rs2171384 | 0.82[EUR][1000 genomes] |
rs2632395 | 1.00[YRI][hapmap] |
rs2632412 | 0.85[JPT][hapmap] |
rs28408270 | 0.81[EUR][1000 genomes] |
rs2865343 | 0.82[EUR][1000 genomes] |
rs2865344 | 0.82[EUR][1000 genomes] |
rs34396894 | 0.82[EUR][1000 genomes] |
rs4438731 | 0.83[EUR][1000 genomes] |
rs4560373 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes] |
rs4693368 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4693374 | 0.87[EUR][1000 genomes] |
rs4693375 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes] |
rs5019896 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6532469 | 0.82[EUR][1000 genomes] |
rs6532472 | 0.92[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6817795 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6821438 | 0.83[EUR][1000 genomes] |
rs6821638 | 0.83[EUR][1000 genomes] |
rs6857967 | 0.96[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6858265 | 0.81[EUR][1000 genomes] |
rs6858342 | 0.81[EUR][1000 genomes] |
rs722486 | 0.83[EUR][1000 genomes] |
rs72665608 | 0.83[EUR][1000 genomes] |
rs72665629 | 0.81[EUR][1000 genomes] |
rs7654565 | 0.81[EUR][1000 genomes] |
rs7654919 | 0.92[CEU][hapmap];0.82[EUR][1000 genomes] |
rs7668980 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7669168 | 0.82[EUR][1000 genomes] |
rs7676797 | 0.86[EUR][1000 genomes] |
rs7678054 | 0.83[EUR][1000 genomes] |
rs7682116 | 0.82[AMR][1000 genomes] |
rs899133 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs899134 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9307136 | 0.81[EUR][1000 genomes] |
rs9307137 | 0.82[EUR][1000 genomes] |
rs965807 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv931979 | chr4:94289958-95121723 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv821636 | chr4:94439636-95116590 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv879617 | chr4:94980768-95055821 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv879618 | chr4:94980768-95136164 | Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
5 | nsv993495 | chr4:94992315-95482578 | Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
6 | nsv879621 | chr4:95046907-95099194 | Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription | Chromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:95047000-95054000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |