Variant report

Variant	rs7676797
Chromosome Location	chr4:95099194-95099195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10008044	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10018905	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10023115	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10024198	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10028613	0.80[ASN][1000 genomes]
rs10433969	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10516947	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11097408	0.82[AFR][1000 genomes]
rs11943926	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12501138	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12505596	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12511433	0.82[AFR][1000 genomes]
rs12513267	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1509945	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1509946	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1565062	0.82[AFR][1000 genomes]
rs1585651	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17302300	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17374832	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1876918	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2171384	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2632412	0.85[ASN][1000 genomes]
rs28408270	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28469860	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2865343	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2865344	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2865350	0.80[ASN][1000 genomes]
rs34396894	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4438731	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4560373	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4692999	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4693368	0.81[EUR][1000 genomes]
rs4693374	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4693375	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6532469	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6532472	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6815207	0.86[EUR][1000 genomes]
rs6817795	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6821438	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6821638	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6857967	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6858265	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6858342	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs722486	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72665608	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72665629	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7437089	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7654565	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7654919	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7669168	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7678054	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7680953	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9307136	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9307137	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv879621	chr4:95046907-95099194	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95089800-95099600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:95098200-95099200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:95099000-95099400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:95099000-95099400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:95099000-95099600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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