Variant report

Variant	rs5019896
Chromosome Location	chr4:95035751-95035752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10018905	0.81[EUR][1000 genomes]
rs10023582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10024198	0.81[EUR][1000 genomes]
rs10433969	0.81[EUR][1000 genomes]
rs10516947	0.81[CEU][hapmap]
rs12505596	0.89[CEU][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap]
rs12505694	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1472984	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1509945	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1509946	0.89[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1585651	0.82[EUR][1000 genomes]
rs2632412	0.85[JPT][hapmap]
rs4560373	0.88[CEU][hapmap]
rs4693368	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4693374	0.80[EUR][1000 genomes]
rs4693375	0.88[CEU][hapmap]
rs6532472	0.89[CEU][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap]
rs6815207	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6817795	0.88[CEU][hapmap]
rs6857967	0.92[CEU][hapmap]
rs7654919	0.89[CEU][hapmap];0.86[MEX][hapmap]
rs7668980	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7682116	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs899133	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs899134	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs965807	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv879617	chr4:94980768-95055821	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv879618	chr4:94980768-95136164	Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv879620	chr4:95012684-95049123	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1800961	chr4:95026709-95039877	Enhancers Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95035200-95039000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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