Variant report

Variant	rs6855358
Chromosome Location	chr4:95218103-95218104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10000247	0.83[EUR][1000 genomes]
rs10016806	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10024642	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10028613	0.91[EUR][1000 genomes]
rs10030586	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10034781	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10856908	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11097408	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11097411	0.84[ASN][1000 genomes]
rs11943926	0.81[AFR][1000 genomes]
rs12499309	0.82[ASN][1000 genomes]
rs12511433	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12645192	0.80[ASN][1000 genomes]
rs12646184	0.82[ASN][1000 genomes]
rs13111083	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13112528	0.84[ASN][1000 genomes]
rs13132963	0.86[ASN][1000 genomes]
rs13135934	0.82[ASN][1000 genomes]
rs13142645	0.82[ASN][1000 genomes]
rs13434570	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13435702	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1565062	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17021463	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17310266	0.82[ASN][1000 genomes]
rs17310526	0.86[ASN][1000 genomes]
rs17376404	0.84[ASN][1000 genomes]
rs17376488	0.84[ASN][1000 genomes]
rs17623135	0.85[ASN][1000 genomes]
rs183993	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2016483	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2087170	0.82[ASN][1000 genomes]
rs2129595	0.86[ASN][1000 genomes]
rs2171381	0.84[ASN][1000 genomes]
rs2276910	0.81[EUR][1000 genomes]
rs2632399	0.80[ASN][1000 genomes]
rs2632405	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2632410	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2632411	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2632412	0.80[EUR][1000 genomes]
rs2632417	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2664872	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2664880	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2664881	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2664892	0.80[ASN][1000 genomes]
rs2664894	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs282447	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs282450	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2865345	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2865350	0.89[EUR][1000 genomes]
rs28815470	0.82[AMR][1000 genomes]
rs2883	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3106136	0.80[ASN][1000 genomes]
rs3113863	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34145031	0.82[ASN][1000 genomes]
rs34383543	0.86[ASN][1000 genomes]
rs34711938	0.86[ASN][1000 genomes]
rs35361491	0.82[ASN][1000 genomes]
rs35670996	0.82[ASN][1000 genomes]
rs35995707	0.82[ASN][1000 genomes]
rs4235050	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4558832	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4693003	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4693004	0.82[ASN][1000 genomes]
rs4693375	0.81[AFR][1000 genomes]
rs4693378	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4693381	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61004493	0.82[ASN][1000 genomes]
rs61514245	0.82[ASN][1000 genomes]
rs6532476	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6823404	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6840674	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6841121	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7435106	0.82[ASN][1000 genomes]
rs7439869	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7657789	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7685121	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7697827	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8026	0.85[ASN][1000 genomes]
rs8336	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9307136	0.81[AFR][1000 genomes]
rs9884209	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9884431	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
2	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:95204800-95220000	Weak transcription	K562	blood
4	chr4:95205400-95225000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:95206000-95219800	Weak transcription	NHEK	skin
6	chr4:95207800-95219800	Weak transcription	Fetal Intestine Large	intestine
7	chr4:95208200-95227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:95208800-95218600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:95208800-95227200	Weak transcription	Left Ventricle	heart
10	chr4:95210000-95228600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:95211400-95220000	Weak transcription	HMEC	breast
12	chr4:95211400-95220200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:95212200-95219800	Weak transcription	HepG2	liver
14	chr4:95212800-95228800	Weak transcription	A549	lung
15	chr4:95213200-95219800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:95213200-95219800	Weak transcription	Liver	Liver
17	chr4:95213600-95218600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:95213800-95220200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:95214200-95219800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:95214200-95220000	Weak transcription	Fetal Intestine Small	intestine
21	chr4:95214200-95226600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:95214200-95226800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:95214200-95226800	Weak transcription	Osteobl	bone
24	chr4:95214200-95227600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:95214400-95219800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:95214400-95220600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:95214400-95223200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:95214400-95223600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:95214400-95224800	Weak transcription	HSMM	muscle
30	chr4:95214400-95226400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:95214400-95226400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:95214400-95226800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:95214400-95227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:95214400-95227600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:95216000-95220000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:95217200-95227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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