Variant report

Variant	rs28403447
Chromosome Location	chr4:95257753-95257754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10015608	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10016806	0.85[ASN][1000 genomes]
rs10024642	0.87[ASN][1000 genomes]
rs10030586	0.83[ASN][1000 genomes]
rs10034781	0.87[ASN][1000 genomes]
rs10433970	0.80[ASN][1000 genomes]
rs10516947	0.80[ASN][1000 genomes]
rs10516950	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10856908	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10856909	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11097406	0.82[ASN][1000 genomes]
rs11097407	0.82[ASN][1000 genomes]
rs11097408	0.87[ASN][1000 genomes]
rs11097411	0.87[ASN][1000 genomes]
rs11097413	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097414	0.83[ASN][1000 genomes]
rs11097417	0.83[EUR][1000 genomes]
rs11943926	0.82[ASN][1000 genomes]
rs12499309	0.85[ASN][1000 genomes]
rs12505596	0.80[ASN][1000 genomes]
rs12511433	0.87[ASN][1000 genomes]
rs12513267	0.80[ASN][1000 genomes]
rs12643901	0.82[ASN][1000 genomes]
rs12645192	0.83[ASN][1000 genomes]
rs12646184	0.85[ASN][1000 genomes]
rs13111083	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13112528	0.87[ASN][1000 genomes]
rs13132963	0.86[ASN][1000 genomes]
rs13135934	0.85[ASN][1000 genomes]
rs13138688	0.89[ASN][1000 genomes]
rs13142645	0.85[ASN][1000 genomes]
rs13434570	0.87[ASN][1000 genomes]
rs13435702	0.87[ASN][1000 genomes]
rs1426575	0.83[ASN][1000 genomes]
rs1565062	0.87[ASN][1000 genomes]
rs17021463	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17310266	0.85[ASN][1000 genomes]
rs17310526	0.86[ASN][1000 genomes]
rs17311008	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17374832	0.80[ASN][1000 genomes]
rs17376404	0.87[ASN][1000 genomes]
rs17376488	0.87[ASN][1000 genomes]
rs17623135	0.85[ASN][1000 genomes]
rs183993	0.82[ASN][1000 genomes]
rs1965696	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2016476	0.96[ASN][1000 genomes]
rs2016483	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2059605	0.99[ASN][1000 genomes]
rs2087170	0.85[ASN][1000 genomes]
rs2129595	0.86[ASN][1000 genomes]
rs2171381	0.87[ASN][1000 genomes]
rs2171384	0.80[ASN][1000 genomes]
rs2276910	0.82[ASN][1000 genomes]
rs2289186	0.97[ASN][1000 genomes]
rs2632399	0.83[ASN][1000 genomes]
rs2632401	0.82[ASN][1000 genomes]
rs2632405	0.83[ASN][1000 genomes]
rs2632410	0.83[ASN][1000 genomes]
rs2632411	0.83[ASN][1000 genomes]
rs2632417	0.82[ASN][1000 genomes]
rs2664871	0.82[ASN][1000 genomes]
rs2664872	0.83[ASN][1000 genomes]
rs2664880	0.83[ASN][1000 genomes]
rs2664881	0.83[ASN][1000 genomes]
rs2664892	0.83[ASN][1000 genomes]
rs2664894	0.85[ASN][1000 genomes]
rs282447	0.83[ASN][1000 genomes]
rs282449	0.82[ASN][1000 genomes]
rs282450	0.83[ASN][1000 genomes]
rs2865343	0.80[ASN][1000 genomes]
rs2865344	0.80[ASN][1000 genomes]
rs2865345	0.85[ASN][1000 genomes]
rs2865352	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28696050	0.80[ASN][1000 genomes]
rs2883	0.85[ASN][1000 genomes]
rs28838299	0.81[ASN][1000 genomes]
rs3106135	0.82[ASN][1000 genomes]
rs3106136	0.83[ASN][1000 genomes]
rs3113862	0.82[ASN][1000 genomes]
rs3113863	0.83[ASN][1000 genomes]
rs34145031	0.85[ASN][1000 genomes]
rs34181160	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34465979	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34711938	0.86[ASN][1000 genomes]
rs35361491	0.85[ASN][1000 genomes]
rs35670996	0.85[ASN][1000 genomes]
rs35995707	0.85[ASN][1000 genomes]
rs4235050	0.85[ASN][1000 genomes]
rs4558832	0.81[ASN][1000 genomes]
rs4560373	0.80[ASN][1000 genomes]
rs4693003	0.83[ASN][1000 genomes]
rs4693004	0.85[ASN][1000 genomes]
rs4693375	0.82[ASN][1000 genomes]
rs4693377	0.83[ASN][1000 genomes]
rs4693378	0.87[ASN][1000 genomes]
rs4693381	0.87[ASN][1000 genomes]
rs58796749	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59483091	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61004493	0.85[ASN][1000 genomes]
rs61514245	0.85[ASN][1000 genomes]
rs62320439	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62320441	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62320444	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6532472	0.80[ASN][1000 genomes]
rs6532476	0.87[ASN][1000 genomes]
rs6532479	0.82[ASN][1000 genomes]
rs66581998	0.83[ASN][1000 genomes]
rs67552174	0.82[ASN][1000 genomes]
rs6817795	0.80[ASN][1000 genomes]
rs6823404	0.85[ASN][1000 genomes]
rs6840674	0.86[ASN][1000 genomes]
rs6841121	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6851128	0.85[ASN][1000 genomes]
rs6857967	0.80[ASN][1000 genomes]
rs6858342	0.80[ASN][1000 genomes]
rs724260	0.83[ASN][1000 genomes]
rs72665629	0.80[ASN][1000 genomes]
rs72665658	0.82[ASN][1000 genomes]
rs7435106	0.85[ASN][1000 genomes]
rs7439869	0.87[ASN][1000 genomes]
rs7442254	0.81[ASN][1000 genomes]
rs7654565	0.80[ASN][1000 genomes]
rs7654919	0.82[ASN][1000 genomes]
rs7657789	0.87[ASN][1000 genomes]
rs7669168	0.80[ASN][1000 genomes]
rs7672464	0.83[EUR][1000 genomes]
rs7672527	0.83[EUR][1000 genomes]
rs7672999	0.82[EUR][1000 genomes]
rs767657	0.96[ASN][1000 genomes]
rs7685121	0.87[ASN][1000 genomes]
rs7697827	0.87[ASN][1000 genomes]
rs8026	0.85[ASN][1000 genomes]
rs8336	0.87[ASN][1000 genomes]
rs901615	0.96[ASN][1000 genomes]
rs9307136	0.82[ASN][1000 genomes]
rs9307137	0.80[ASN][1000 genomes]
rs9884209	0.87[ASN][1000 genomes]
rs9884431	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95249000-95260800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95249400-95261000	Weak transcription	Placenta	Placenta
3	chr4:95254000-95259200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:95254400-95259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:95255200-95258400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:95257600-95258200	Enhancers	K562	blood
7	chr4:95257600-95258400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr4:95257600-95258400	Active TSS	A549	lung
9	chr4:95257600-95260000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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