Variant report

Variant	rs6532479
Chromosome Location	chr4:95259235-95259236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10006191	0.81[AMR][1000 genomes]
rs10015608	0.86[ASN][1000 genomes]
rs10016806	0.88[JPT][hapmap]
rs10020236	0.82[AMR][1000 genomes]
rs10030586	0.88[JPT][hapmap]
rs10034781	0.88[JPT][hapmap]
rs10433970	0.88[JPT][hapmap]
rs10516947	0.94[JPT][hapmap]
rs10516950	0.81[ASN][1000 genomes]
rs10856909	1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11097407	0.88[JPT][hapmap]
rs11097408	0.88[JPT][hapmap]
rs11097414	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097417	1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11722476	0.83[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap]
rs11727030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11932054	0.92[CEU][hapmap];0.95[CHB][hapmap]
rs12499309	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs12505596	0.88[JPT][hapmap]
rs12511433	0.88[JPT][hapmap]
rs12646184	0.82[CEU][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap]
rs12646467	0.95[CHB][hapmap]
rs12646673	0.84[AMR][1000 genomes]
rs13135934	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs13138688	0.89[EUR][1000 genomes]
rs13142645	0.83[CEU][hapmap];0.87[JPT][hapmap]
rs13434570	0.88[JPT][hapmap]
rs1344612	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1426575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1565062	0.88[JPT][hapmap]
rs1593554	0.82[AMR][1000 genomes]
rs17021507	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17311008	0.85[ASN][1000 genomes]
rs183993	0.88[JPT][hapmap]
rs1965049	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1965696	0.85[ASN][1000 genomes]
rs1991316	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2016476	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2016483	0.81[ASN][1000 genomes]
rs2059605	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2087170	0.82[CEU][hapmap];0.80[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap]
rs2289186	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2632401	0.83[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap]
rs2632410	0.88[JPT][hapmap]
rs2632411	0.88[JPT][hapmap]
rs2664871	0.83[GIH][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap]
rs2664892	0.88[JPT][hapmap]
rs282449	0.88[JPT][hapmap]
rs28403447	0.82[ASN][1000 genomes]
rs28408371	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2865345	0.88[JPT][hapmap]
rs2865353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2883	0.88[JPT][hapmap]
rs2902979	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs3106134	0.83[GIH][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap]
rs3106136	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs3113863	0.88[JPT][hapmap]
rs34181160	0.85[ASN][1000 genomes]
rs34465979	0.81[ASN][1000 genomes]
rs4282187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4560373	0.88[JPT][hapmap]
rs4693004	0.81[CEU][hapmap];0.83[GIH][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap]
rs4693375	0.88[JPT][hapmap]
rs4693376	0.93[JPT][hapmap]
rs4693381	0.83[JPT][hapmap]
rs58796749	0.96[ASN][1000 genomes]
rs59483091	0.90[ASN][1000 genomes]
rs62320441	0.94[ASN][1000 genomes]
rs62320444	0.98[ASN][1000 genomes]
rs6532472	0.88[JPT][hapmap]
rs6532476	0.88[JPT][hapmap]
rs6532481	0.84[AMR][1000 genomes]
rs6532482	0.82[AMR][1000 genomes]
rs6817795	0.88[JPT][hapmap]
rs6823404	0.88[JPT][hapmap]
rs6825005	0.82[AMR][1000 genomes]
rs6826671	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6839224	0.84[AMR][1000 genomes]
rs6840479	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6847767	0.84[AMR][1000 genomes]
rs6851128	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6857967	0.88[JPT][hapmap]
rs724260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7435106	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs7438414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7654919	0.88[JPT][hapmap]
rs7657805	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7672156	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs7672464	0.91[ASN][1000 genomes]
rs7672527	0.90[ASN][1000 genomes]
rs7672999	0.86[ASN][1000 genomes]
rs767657	0.83[ASN][1000 genomes]
rs7685121	0.80[JPT][hapmap]
rs7694491	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.84[MEX][hapmap]
rs8026	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs8336	0.88[JPT][hapmap]
rs901615	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9997915	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95249000-95260800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95249400-95261000	Weak transcription	Placenta	Placenta
3	chr4:95254400-95259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:95257600-95260000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:95258200-95260000	Weak transcription	K562	blood
6	chr4:95258400-95259800	Weak transcription	A549	lung
7	chr4:95258400-95259800	Weak transcription	GM12878-XiMat	blood
8	chr4:95258400-95260000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:95258400-95260000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:95258400-95260400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:95259000-95260000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:95259200-95260200	Enhancers	Primary hematopoietic stem cells	blood

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