Variant report

Variant	rs6532481
Chromosome Location	chr4:95277311-95277312
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95273594..95275499-chr4:95275872..95278720,2	K562	blood:
2	chr4:95271686..95274646-chr4:95276963..95280087,3	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10006191	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10020236	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020259	0.86[EUR][1000 genomes]
rs10033087	0.85[EUR][1000 genomes]
rs10033157	0.85[EUR][1000 genomes]
rs10856909	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs11097414	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11097417	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs11097418	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097419	0.86[EUR][1000 genomes]
rs11097420	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11097422	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11097423	0.86[EUR][1000 genomes]
rs11097426	0.86[EUR][1000 genomes]
rs11721714	0.86[EUR][1000 genomes]
rs11726709	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11726734	0.82[EUR][1000 genomes]
rs11727030	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11734880	0.86[EUR][1000 genomes]
rs11932054	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11944941	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11944992	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12507134	0.97[ASN][1000 genomes]
rs12646467	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12646487	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12646673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13126976	0.86[EUR][1000 genomes]
rs13146089	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13435518	0.86[EUR][1000 genomes]
rs1344612	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1426575	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1529339	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1593553	0.97[EUR][1000 genomes]
rs1593554	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609423	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17021507	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17021531	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17311008	0.91[ASN][1000 genomes]
rs17311521	0.80[ASN][1000 genomes]
rs17377118	0.97[ASN][1000 genomes]
rs17565759	0.97[ASN][1000 genomes]
rs1965049	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1965696	0.91[ASN][1000 genomes]
rs1968333	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1991316	0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2195001	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2632401	0.82[MEX][hapmap]
rs2664871	0.83[MEX][hapmap]
rs28408371	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28437833	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28458965	0.86[EUR][1000 genomes]
rs28463907	0.86[EUR][1000 genomes]
rs2865353	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3106134	0.83[MEX][hapmap]
rs34181160	0.91[ASN][1000 genomes]
rs3919616	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4282187	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4626213	0.81[ASN][1000 genomes]
rs4693004	0.83[MEX][hapmap]
rs4699410	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4699411	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4699440	0.86[EUR][1000 genomes]
rs4699459	0.81[ASN][1000 genomes]
rs57939388	0.97[ASN][1000 genomes]
rs61056400	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62320444	0.81[ASN][1000 genomes]
rs62321981	0.86[EUR][1000 genomes]
rs6419132	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532479	0.84[AMR][1000 genomes]
rs6532480	0.98[ASN][1000 genomes]
rs6532482	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532483	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6532485	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6532486	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6532487	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6825005	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825431	0.86[EUR][1000 genomes]
rs6826671	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6826736	0.85[EUR][1000 genomes]
rs6839224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839950	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840409	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840479	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6841656	0.81[ASN][1000 genomes]
rs6847590	0.86[EUR][1000 genomes]
rs6847767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847989	0.98[ASN][1000 genomes]
rs6851128	0.82[AMR][1000 genomes]
rs6853674	0.86[EUR][1000 genomes]
rs6856971	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6857185	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs724260	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7438414	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7657805	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7658390	0.86[EUR][1000 genomes]
rs7658431	0.84[EUR][1000 genomes]
rs7658830	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7664549	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7666873	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7670194	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7672156	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672464	0.88[ASN][1000 genomes]
rs7672527	0.86[ASN][1000 genomes]
rs7672613	0.86[EUR][1000 genomes]
rs7672999	0.83[ASN][1000 genomes]
rs7674215	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7675615	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7680426	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7685514	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7691132	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7694491	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9997915	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv519228	chr4:95277311-95292702	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95274000-95279000	Weak transcription	HUVEC	blood vessel
2	chr4:95277200-95277400	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links