Variant report

Variant	rs1593553
Chromosome Location	chr4:95278670-95278671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95273594..95275499-chr4:95275872..95278720,2	K562	blood:
2	chr4:95271686..95274646-chr4:95276963..95280087,3	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10006191	0.83[EUR][1000 genomes]
rs10020236	0.97[EUR][1000 genomes]
rs10020259	0.86[EUR][1000 genomes]
rs10033087	0.84[EUR][1000 genomes]
rs10033157	0.84[EUR][1000 genomes]
rs11097418	0.85[EUR][1000 genomes]
rs11097419	0.86[EUR][1000 genomes]
rs11097420	0.86[EUR][1000 genomes]
rs11097422	0.86[EUR][1000 genomes]
rs11097423	0.86[EUR][1000 genomes]
rs11097426	0.85[EUR][1000 genomes]
rs11721714	0.85[EUR][1000 genomes]
rs11726709	0.86[EUR][1000 genomes]
rs11726734	0.81[EUR][1000 genomes]
rs11727030	0.83[EUR][1000 genomes]
rs11734880	0.86[EUR][1000 genomes]
rs11932054	0.85[EUR][1000 genomes]
rs11944941	0.85[EUR][1000 genomes]
rs11944992	0.86[EUR][1000 genomes]
rs12646487	0.86[EUR][1000 genomes]
rs12646673	0.94[EUR][1000 genomes]
rs13126976	0.86[EUR][1000 genomes]
rs13146089	0.86[EUR][1000 genomes]
rs13435518	0.85[EUR][1000 genomes]
rs1344612	0.84[EUR][1000 genomes]
rs1529339	0.86[EUR][1000 genomes]
rs1593554	0.97[EUR][1000 genomes]
rs1609423	0.86[EUR][1000 genomes]
rs17021507	0.84[EUR][1000 genomes]
rs17021531	0.86[EUR][1000 genomes]
rs1968333	0.83[EUR][1000 genomes]
rs1991316	0.84[EUR][1000 genomes]
rs2195001	0.86[EUR][1000 genomes]
rs28408371	0.84[EUR][1000 genomes]
rs28437833	0.86[EUR][1000 genomes]
rs28458965	0.86[EUR][1000 genomes]
rs28463907	0.85[EUR][1000 genomes]
rs2865353	0.82[EUR][1000 genomes]
rs3919616	0.86[EUR][1000 genomes]
rs4282187	0.84[EUR][1000 genomes]
rs4699410	0.86[EUR][1000 genomes]
rs4699411	0.86[EUR][1000 genomes]
rs4699440	0.86[EUR][1000 genomes]
rs61056400	0.86[EUR][1000 genomes]
rs62321981	0.85[EUR][1000 genomes]
rs6419132	0.85[EUR][1000 genomes]
rs6532481	0.97[EUR][1000 genomes]
rs6532482	0.97[EUR][1000 genomes]
rs6532483	0.85[EUR][1000 genomes]
rs6532485	0.86[EUR][1000 genomes]
rs6532486	0.86[EUR][1000 genomes]
rs6532487	0.86[EUR][1000 genomes]
rs6825005	0.95[EUR][1000 genomes]
rs6825431	0.85[EUR][1000 genomes]
rs6826671	0.84[EUR][1000 genomes]
rs6826736	0.84[EUR][1000 genomes]
rs6839224	0.97[EUR][1000 genomes]
rs6839950	0.86[EUR][1000 genomes]
rs6840409	0.83[EUR][1000 genomes]
rs6840479	0.88[EUR][1000 genomes]
rs6847590	0.85[EUR][1000 genomes]
rs6847767	0.95[EUR][1000 genomes]
rs6853674	0.85[EUR][1000 genomes]
rs6856971	0.86[EUR][1000 genomes]
rs6857185	0.86[EUR][1000 genomes]
rs7438414	0.85[EUR][1000 genomes]
rs7657805	0.84[EUR][1000 genomes]
rs7658390	0.86[EUR][1000 genomes]
rs7658431	0.83[EUR][1000 genomes]
rs7658830	0.85[EUR][1000 genomes]
rs7664549	0.86[EUR][1000 genomes]
rs7666873	0.85[EUR][1000 genomes]
rs7670194	0.86[EUR][1000 genomes]
rs7672156	0.84[EUR][1000 genomes]
rs7672613	0.86[EUR][1000 genomes]
rs7674215	0.85[EUR][1000 genomes]
rs7675615	0.85[EUR][1000 genomes]
rs7680426	0.85[EUR][1000 genomes]
rs7685514	0.85[EUR][1000 genomes]
rs7691132	0.85[EUR][1000 genomes]
rs7694491	0.85[EUR][1000 genomes]
rs9997915	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv519228	chr4:95277311-95292702	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95274000-95279000	Weak transcription	HUVEC	blood vessel

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