Variant report

Variant	rs6840479
Chromosome Location	chr4:95275842-95275843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95273532..95276407-chr4:95279365..95281043,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10006191	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10020236	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10856909	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs11097414	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11097417	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs11097418	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11097420	0.81[ASN][1000 genomes]
rs11097422	0.81[ASN][1000 genomes]
rs11726709	0.81[ASN][1000 genomes]
rs11727030	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11932054	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11944941	0.81[ASN][1000 genomes]
rs11944992	0.81[ASN][1000 genomes]
rs12499309	0.82[CEU][hapmap]
rs12507134	0.97[ASN][1000 genomes]
rs12646184	0.82[CEU][hapmap]
rs12646467	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12646487	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12646673	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13135934	0.83[CEU][hapmap]
rs13142645	0.84[CEU][hapmap]
rs13146089	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1344612	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1426575	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529339	0.81[ASN][1000 genomes]
rs1593553	0.88[EUR][1000 genomes]
rs1593554	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1609423	0.83[ASN][1000 genomes]
rs17021507	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17021531	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17311008	0.92[ASN][1000 genomes]
rs17311521	0.81[ASN][1000 genomes]
rs17377118	0.96[ASN][1000 genomes]
rs17565759	0.97[ASN][1000 genomes]
rs1965049	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1965696	0.92[ASN][1000 genomes]
rs1968333	0.81[ASN][1000 genomes]
rs1991316	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087170	0.82[CEU][hapmap]
rs2195001	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28408371	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28437833	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2865353	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2902979	0.83[CEU][hapmap]
rs3106136	0.82[CEU][hapmap]
rs34181160	0.92[ASN][1000 genomes]
rs3919616	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282187	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4626213	0.81[ASN][1000 genomes]
rs4693004	0.81[CEU][hapmap]
rs4699410	0.81[ASN][1000 genomes]
rs4699411	0.81[ASN][1000 genomes]
rs4699459	0.81[ASN][1000 genomes]
rs57939388	0.97[ASN][1000 genomes]
rs61056400	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62320444	0.82[ASN][1000 genomes]
rs6419132	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6532479	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6532480	0.97[ASN][1000 genomes]
rs6532481	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532482	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532483	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6532485	0.81[ASN][1000 genomes]
rs6532486	0.81[ASN][1000 genomes]
rs6532487	0.81[ASN][1000 genomes]
rs6825005	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6826671	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6839224	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839950	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6840409	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6841656	0.81[ASN][1000 genomes]
rs6847767	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6847989	0.97[ASN][1000 genomes]
rs6851128	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6856971	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6857185	0.83[ASN][1000 genomes]
rs724260	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7435106	0.83[CEU][hapmap]
rs7438414	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7657805	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7658830	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7664549	0.81[ASN][1000 genomes]
rs7666873	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7670194	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672156	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7672464	0.89[ASN][1000 genomes]
rs7672527	0.87[ASN][1000 genomes]
rs7672999	0.84[ASN][1000 genomes]
rs7674215	0.81[AMR][1000 genomes]
rs7675615	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7680426	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7685514	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7691132	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7694491	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8026	0.81[CEU][hapmap]
rs9997915	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95271600-95277200	Weak transcription	Placenta	Placenta
2	chr4:95273400-95276000	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:95273400-95276200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:95274000-95276000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:95274000-95276400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:95274000-95279000	Weak transcription	HUVEC	blood vessel
7	chr4:95275600-95276000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:95275600-95276000	Enhancers	Fetal Muscle Leg	muscle
9	chr4:95275600-95276000	Enhancers	Lung	lung

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