Variant report

Variant	rs6847989
Chromosome Location	chr4:95277099-95277100
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95273594..95275499-chr4:95275872..95278720,2	K562	blood:
2	chr4:95271686..95274646-chr4:95276963..95280087,3	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10006191	0.95[ASN][1000 genomes]
rs10020236	0.98[ASN][1000 genomes]
rs10020259	0.81[ASN][1000 genomes]
rs10034781	0.90[MEX][hapmap]
rs10856909	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11097408	0.90[MEX][hapmap]
rs11097417	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11097418	0.97[ASN][1000 genomes]
rs11097419	0.80[ASN][1000 genomes]
rs11097420	0.82[ASN][1000 genomes]
rs11097421	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11097423	0.81[ASN][1000 genomes]
rs11726608	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11727030	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs11734869	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11932054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11944941	0.82[ASN][1000 genomes]
rs11944992	0.82[ASN][1000 genomes]
rs12507134	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12511686	0.85[EUR][1000 genomes]
rs12512832	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12646467	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12646487	0.97[ASN][1000 genomes]
rs12646673	0.98[ASN][1000 genomes]
rs13126976	0.81[ASN][1000 genomes]
rs13133738	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13146089	0.97[ASN][1000 genomes]
rs13435518	0.81[ASN][1000 genomes]
rs1344612	0.87[ASN][1000 genomes]
rs1529339	0.82[ASN][1000 genomes]
rs1593554	0.98[ASN][1000 genomes]
rs1609423	0.80[ASN][1000 genomes]
rs17021507	0.91[ASN][1000 genomes]
rs17021531	0.97[ASN][1000 genomes]
rs17311008	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17311521	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17377118	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17565759	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1965049	0.86[ASN][1000 genomes]
rs1965696	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1968332	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1968333	0.82[ASN][1000 genomes]
rs1991316	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs2195001	0.97[ASN][1000 genomes]
rs28408371	0.91[ASN][1000 genomes]
rs28437833	0.97[ASN][1000 genomes]
rs28458965	0.81[ASN][1000 genomes]
rs28463907	0.81[ASN][1000 genomes]
rs2865353	0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs34181160	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34441565	0.82[EUR][1000 genomes]
rs3919616	0.97[ASN][1000 genomes]
rs4282187	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4626213	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699410	0.82[ASN][1000 genomes]
rs4699411	0.82[ASN][1000 genomes]
rs4699440	0.81[ASN][1000 genomes]
rs4699459	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699464	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57939388	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58796749	0.80[ASN][1000 genomes]
rs61056400	0.97[ASN][1000 genomes]
rs62320439	0.81[AMR][1000 genomes]
rs62320931	0.82[EUR][1000 genomes]
rs62320932	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6419132	0.97[ASN][1000 genomes]
rs6532476	0.85[MEX][hapmap]
rs6532480	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532481	0.98[ASN][1000 genomes]
rs6532482	0.98[ASN][1000 genomes]
rs6532483	0.80[ASN][1000 genomes]
rs6532485	0.82[ASN][1000 genomes]
rs6532486	0.82[ASN][1000 genomes]
rs6532487	0.82[ASN][1000 genomes]
rs6823404	0.85[MEX][hapmap]
rs6825005	0.98[ASN][1000 genomes]
rs6826671	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6839224	0.97[ASN][1000 genomes]
rs6839950	0.97[ASN][1000 genomes]
rs6840409	0.97[ASN][1000 genomes]
rs6840479	0.97[ASN][1000 genomes]
rs6841656	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6847767	0.98[ASN][1000 genomes]
rs6851128	0.81[ASN][1000 genomes]
rs6856971	0.80[ASN][1000 genomes]
rs6857185	0.80[ASN][1000 genomes]
rs7438414	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[ASN][1000 genomes]
rs7439869	0.81[MEX][hapmap]
rs7657805	0.91[ASN][1000 genomes]
rs7658390	0.81[ASN][1000 genomes]
rs7658830	0.82[ASN][1000 genomes]
rs7664549	0.82[ASN][1000 genomes]
rs7666873	0.97[ASN][1000 genomes]
rs7670194	0.97[ASN][1000 genomes]
rs7672156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7672464	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7672527	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7672613	0.80[ASN][1000 genomes]
rs7672999	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7674215	0.81[ASN][1000 genomes]
rs7675615	0.80[ASN][1000 genomes]
rs7680426	0.80[ASN][1000 genomes]
rs7685121	0.83[MEX][hapmap]
rs7685514	0.82[ASN][1000 genomes]
rs7691132	0.97[ASN][1000 genomes]
rs7694491	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8336	0.84[MEX][hapmap]
rs9997915	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95271600-95277200	Weak transcription	Placenta	Placenta
2	chr4:95274000-95279000	Weak transcription	HUVEC	blood vessel

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