Variant report

Variant	rs6826671
Chromosome Location	chr4:95271881-95271882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95270791..95273174-chr4:95372376..95374373,2	K562	blood:
2	chr4:95271686..95274646-chr4:95276963..95280087,3	K562	blood:
3	chr4:95268744..95272012-chr4:95272731..95275757,3	K562	blood:

Variant related genes	Relation type
ENSG00000163110	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10006191	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10020236	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10856909	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.93[ASN][1000 genomes]
rs11097414	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11097417	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.93[ASN][1000 genomes]
rs11097418	0.91[ASN][1000 genomes]
rs11722476	0.83[GIH][hapmap];0.83[MEX][hapmap]
rs11727030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11932054	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12499309	0.81[CEU][hapmap]
rs12507134	0.90[ASN][1000 genomes]
rs12646184	0.82[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap]
rs12646467	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12646487	0.92[ASN][1000 genomes]
rs12646673	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13135934	0.82[CEU][hapmap]
rs13138688	0.81[EUR][1000 genomes]
rs13142645	0.83[CEU][hapmap]
rs13146089	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1344612	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1426575	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1593553	0.84[EUR][1000 genomes]
rs1593554	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17021507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17021531	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17311008	0.98[ASN][1000 genomes]
rs17377118	0.89[ASN][1000 genomes]
rs17565759	0.90[ASN][1000 genomes]
rs1965049	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1965696	0.98[ASN][1000 genomes]
rs1991316	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2016476	0.82[EUR][1000 genomes]
rs2059605	0.84[EUR][1000 genomes]
rs2087170	0.82[CEU][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap]
rs2195001	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2289186	0.85[EUR][1000 genomes]
rs2632401	0.85[GIH][hapmap];0.86[MEX][hapmap]
rs2664871	0.83[GIH][hapmap];0.87[MEX][hapmap]
rs28408371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437833	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2865353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902979	0.82[CEU][hapmap]
rs3106134	0.83[GIH][hapmap];0.87[MEX][hapmap]
rs3106136	0.81[CEU][hapmap]
rs34181160	0.98[ASN][1000 genomes]
rs3919616	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4282187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4693004	0.81[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap]
rs57939388	0.90[ASN][1000 genomes]
rs58796749	0.86[ASN][1000 genomes]
rs59483091	0.80[ASN][1000 genomes]
rs61056400	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62320441	0.83[ASN][1000 genomes]
rs62320444	0.88[ASN][1000 genomes]
rs6419132	0.91[ASN][1000 genomes]
rs6532479	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6532480	0.91[ASN][1000 genomes]
rs6532481	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6532482	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6825005	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6839224	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6839950	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6840409	0.92[ASN][1000 genomes]
rs6840479	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6847767	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6847989	0.91[ASN][1000 genomes]
rs6851128	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs724260	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7435106	0.82[CEU][hapmap]
rs7438414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7657805	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666873	0.92[ASN][1000 genomes]
rs7670194	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7672156	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7672464	0.95[ASN][1000 genomes]
rs7672527	0.93[ASN][1000 genomes]
rs7672999	0.90[ASN][1000 genomes]
rs7691132	0.91[ASN][1000 genomes]
rs7694491	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.91[ASN][1000 genomes]
rs8026	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs901615	0.82[EUR][1000 genomes]
rs9997915	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95268600-95272800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:95269200-95272600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:95269800-95272800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:95271000-95272600	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:95271200-95272800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:95271400-95272800	Enhancers	Dnd41	blood
7	chr4:95271600-95272800	Weak transcription	Fetal Thymus	thymus
8	chr4:95271600-95277200	Weak transcription	Placenta	Placenta
9	chr4:95271800-95272800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links