Variant report

Variant	rs2059605
Chromosome Location	chr4:95255212-95255213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95248894..95251809-chr4:95252736..95255390,4	K562	blood:

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10016806	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10024642	0.88[ASN][1000 genomes]
rs10030586	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10034781	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10433970	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10516947	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10516950	1.00[ASN][1000 genomes]
rs10856908	0.88[ASN][1000 genomes]
rs10856909	0.80[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap]
rs11097406	0.83[ASN][1000 genomes]
rs11097407	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11097408	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11097411	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11097413	0.96[ASN][1000 genomes]
rs11097414	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11097417	0.80[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap]
rs11722476	0.95[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap]
rs11727030	0.96[CEU][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11932054	0.89[CEU][hapmap]
rs11943926	0.83[ASN][1000 genomes]
rs12499309	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12505596	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12511433	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12513267	0.81[ASN][1000 genomes]
rs12643901	0.83[ASN][1000 genomes]
rs12645192	0.84[ASN][1000 genomes]
rs12646184	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs13111083	0.88[ASN][1000 genomes]
rs13112528	0.88[ASN][1000 genomes]
rs13132963	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13135934	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs13138688	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13142645	0.88[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13434570	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs13435702	0.88[ASN][1000 genomes]
rs1344612	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1426575	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1565062	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17021463	0.88[ASN][1000 genomes]
rs17021507	0.84[EUR][1000 genomes]
rs17310266	0.86[ASN][1000 genomes]
rs17310526	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17374832	0.81[ASN][1000 genomes]
rs17376404	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17376488	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17623135	0.86[ASN][1000 genomes]
rs183993	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1991316	0.96[CEU][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs2016476	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2016483	0.98[ASN][1000 genomes]
rs2087170	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs2129595	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2171381	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2171384	0.81[ASN][1000 genomes]
rs2276910	0.83[ASN][1000 genomes]
rs2289186	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2632399	0.84[ASN][1000 genomes]
rs2632401	0.82[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs2632405	0.84[ASN][1000 genomes]
rs2632410	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2632411	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2632417	0.83[ASN][1000 genomes]
rs2664871	0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs2664872	0.84[ASN][1000 genomes]
rs2664880	0.84[ASN][1000 genomes]
rs2664881	0.84[ASN][1000 genomes]
rs2664892	0.80[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2664894	0.86[ASN][1000 genomes]
rs282447	0.83[ASN][1000 genomes]
rs282449	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs282450	0.84[ASN][1000 genomes]
rs28403447	0.99[ASN][1000 genomes]
rs28408371	0.84[EUR][1000 genomes]
rs2865343	0.81[ASN][1000 genomes]
rs2865344	0.81[ASN][1000 genomes]
rs2865345	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2865352	0.97[ASN][1000 genomes]
rs2865353	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs28696050	0.81[ASN][1000 genomes]
rs2883	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs28838299	0.82[ASN][1000 genomes]
rs2902979	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs3106134	0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs3106135	0.83[ASN][1000 genomes]
rs3106136	0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3113862	0.83[ASN][1000 genomes]
rs3113863	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs34145031	0.86[ASN][1000 genomes]
rs34383543	0.80[ASN][1000 genomes]
rs34465979	1.00[ASN][1000 genomes]
rs34711938	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35361491	0.86[ASN][1000 genomes]
rs35670996	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35995707	0.86[ASN][1000 genomes]
rs4235050	0.86[ASN][1000 genomes]
rs4282187	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4558832	0.82[ASN][1000 genomes]
rs4560373	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4693003	0.84[ASN][1000 genomes]
rs4693004	0.85[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs4693375	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4693376	1.00[JPT][hapmap]
rs4693377	0.83[ASN][1000 genomes]
rs4693378	0.88[ASN][1000 genomes]
rs4693381	0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs58796749	0.85[ASN][1000 genomes]
rs61004493	0.86[ASN][1000 genomes]
rs61514245	0.86[ASN][1000 genomes]
rs62320439	0.96[ASN][1000 genomes]
rs62320441	0.84[ASN][1000 genomes]
rs62320444	0.83[ASN][1000 genomes]
rs6532469	0.80[ASN][1000 genomes]
rs6532472	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6532476	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6532479	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66581998	0.83[ASN][1000 genomes]
rs67552174	0.83[ASN][1000 genomes]
rs6817795	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6823404	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs6826671	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs6840674	0.87[ASN][1000 genomes]
rs6841121	0.88[ASN][1000 genomes]
rs6851128	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6857967	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6858342	0.81[ASN][1000 genomes]
rs724260	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72665629	0.81[ASN][1000 genomes]
rs72665658	0.83[ASN][1000 genomes]
rs7435106	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7438414	0.96[CEU][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7439869	0.81[CHB][hapmap];0.86[CHD][hapmap];0.88[ASN][1000 genomes]
rs7442254	0.82[ASN][1000 genomes]
rs7654565	0.81[ASN][1000 genomes]
rs7654919	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7657789	0.88[ASN][1000 genomes]
rs7657805	0.84[EUR][1000 genomes]
rs7669168	0.81[ASN][1000 genomes]
rs7672156	0.85[CEU][hapmap]
rs767657	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7685121	0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7694491	0.89[CEU][hapmap]
rs7697827	0.88[ASN][1000 genomes]
rs8026	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs8336	0.95[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs901615	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307136	0.83[ASN][1000 genomes]
rs9307137	0.81[ASN][1000 genomes]
rs9884209	0.88[ASN][1000 genomes]
rs9884431	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95249000-95260800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95249400-95261000	Weak transcription	Placenta	Placenta
3	chr4:95252800-95257200	Weak transcription	Gastric	stomach
4	chr4:95254000-95255600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:95254000-95259200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:95254400-95255400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:95254400-95259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:95254600-95255400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:95254600-95255400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:95254600-95255400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:95254800-95255400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:95254800-95255600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:95254800-95256000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:95254800-95256000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:95254800-95256000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:95254800-95256000	Weak transcription	A549	lung
17	chr4:95255000-95256000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:95255000-95256000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:95255000-95256400	Enhancers	Adipose Nuclei	Adipose
20	chr4:95255000-95256800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:95255200-95256400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:95255200-95256600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:95255200-95258400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links