Variant report

Variant	rs11097413
Chromosome Location	chr4:95249286-95249287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95248410..95251790-chr4:95252473..95254073,3	MCF-7	breast:
2	chr4:95248894..95251809-chr4:95252736..95255390,4	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10015608	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10016806	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10024642	0.84[ASN][1000 genomes]
rs10030586	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10034781	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10433970	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10516947	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10516950	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10856908	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10856909	0.96[CEU][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11097407	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11097408	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11097411	0.84[ASN][1000 genomes]
rs11097417	0.96[CEU][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11722476	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11727030	0.94[JPT][hapmap]
rs12499309	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12505596	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12511433	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12645192	0.80[ASN][1000 genomes]
rs12646184	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12646467	0.80[CEU][hapmap]
rs13111083	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13112528	0.84[ASN][1000 genomes]
rs13132963	0.83[ASN][1000 genomes]
rs13135934	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs13138688	0.85[ASN][1000 genomes]
rs13142645	0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs13434570	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs13435702	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1509946	0.96[YRI][hapmap]
rs1565062	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs17021463	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17310266	0.82[ASN][1000 genomes]
rs17310526	0.83[ASN][1000 genomes]
rs17311008	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17376404	0.84[ASN][1000 genomes]
rs17376488	0.84[ASN][1000 genomes]
rs17623135	0.82[ASN][1000 genomes]
rs183993	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1965696	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1991316	0.94[JPT][hapmap]
rs2016476	0.92[ASN][1000 genomes]
rs2016483	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2059605	0.96[ASN][1000 genomes]
rs2087170	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2129595	0.83[ASN][1000 genomes]
rs2171381	0.84[ASN][1000 genomes]
rs2289186	0.94[ASN][1000 genomes]
rs2632399	0.80[ASN][1000 genomes]
rs2632401	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2632405	0.80[ASN][1000 genomes]
rs2632410	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2632411	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2632412	0.84[CEU][hapmap]
rs2664871	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2664872	0.80[ASN][1000 genomes]
rs2664880	0.80[ASN][1000 genomes]
rs2664881	0.80[ASN][1000 genomes]
rs2664892	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs2664894	0.82[ASN][1000 genomes]
rs282449	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs282450	0.80[ASN][1000 genomes]
rs28403447	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2865345	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2865352	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2883	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2902979	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3106134	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs3106136	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs3113863	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs34145031	0.82[ASN][1000 genomes]
rs34181160	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34465979	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34711938	0.83[ASN][1000 genomes]
rs35361491	0.82[ASN][1000 genomes]
rs35670996	0.82[ASN][1000 genomes]
rs35995707	0.82[ASN][1000 genomes]
rs4235050	0.84[CEU][hapmap];0.82[ASN][1000 genomes]
rs4560373	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4693003	0.80[ASN][1000 genomes]
rs4693004	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs4693375	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4693376	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4693378	0.84[ASN][1000 genomes]
rs4693381	0.95[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs58796749	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59483091	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61004493	0.82[ASN][1000 genomes]
rs61514245	0.82[ASN][1000 genomes]
rs62320439	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320441	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62320444	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6532472	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6532476	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6817795	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6823404	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6840674	0.83[ASN][1000 genomes]
rs6841121	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6851128	0.80[ASN][1000 genomes]
rs6857967	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7435106	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7438414	0.94[JPT][hapmap]
rs7439869	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs7654919	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs7657789	0.84[ASN][1000 genomes]
rs7672464	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7672527	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7672999	0.80[EUR][1000 genomes]
rs767657	0.92[ASN][1000 genomes]
rs7685121	0.89[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs7697827	0.84[ASN][1000 genomes]
rs8026	0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs8336	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs901615	0.92[ASN][1000 genomes]
rs9884209	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9884431	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95248000-95249400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:95248200-95251000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr4:95248600-95249400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:95248600-95249400	ZNF genes & repeats	Placenta	Placenta
5	chr4:95248800-95255000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:95249000-95251600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:95249000-95260800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:95249200-95251200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:95249200-95252600	Weak transcription	Gastric	stomach

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