Variant report

Variant	rs62320441
Chromosome Location	chr4:95258410-95258411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10015608	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10028613	0.84[AMR][1000 genomes]
rs10516950	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10856909	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11097413	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11097414	0.95[ASN][1000 genomes]
rs11097417	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11727030	0.89[ASN][1000 genomes]
rs1344612	0.90[ASN][1000 genomes]
rs1426575	0.95[ASN][1000 genomes]
rs17021507	0.83[ASN][1000 genomes]
rs17311008	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1965049	0.83[ASN][1000 genomes]
rs1965696	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1991316	0.88[ASN][1000 genomes]
rs2016476	0.82[ASN][1000 genomes]
rs2016483	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2059605	0.84[ASN][1000 genomes]
rs2289186	0.82[ASN][1000 genomes]
rs28403447	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28408371	0.83[ASN][1000 genomes]
rs2865352	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2865353	0.83[ASN][1000 genomes]
rs34181160	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34465979	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4282187	0.83[ASN][1000 genomes]
rs58796749	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59483091	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62320439	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62320444	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6532479	0.94[ASN][1000 genomes]
rs6826671	0.83[ASN][1000 genomes]
rs6851128	0.97[ASN][1000 genomes]
rs724260	0.95[ASN][1000 genomes]
rs7438414	0.89[ASN][1000 genomes]
rs7657805	0.83[ASN][1000 genomes]
rs7672464	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7672527	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7672999	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs767657	0.82[ASN][1000 genomes]
rs901615	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95249000-95260800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95249400-95261000	Weak transcription	Placenta	Placenta
3	chr4:95254000-95259200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:95254400-95259800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:95257600-95260000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:95258200-95260000	Weak transcription	K562	blood
7	chr4:95258400-95259800	Weak transcription	A549	lung
8	chr4:95258400-95259800	Weak transcription	GM12878-XiMat	blood
9	chr4:95258400-95260000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:95258400-95260000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:95258400-95260400	Weak transcription	Primary T cells fromperipheralblood	blood

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