Variant report

Variant	rs2306802
Chromosome Location	chr4:95186055-95186056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95185779..95187283-chr4:95195279..95198245,2	K562	blood:
2	chr4:95185463..95189802-chr4:95191422..95195146,3	K562	blood:

Variant related genes	Relation type
ENSG00000163104	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11097411	0.87[EUR][1000 genomes]
rs11722476	0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs12499309	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs12643901	0.88[EUR][1000 genomes]
rs12645192	0.94[EUR][1000 genomes]
rs12646184	0.85[CEU][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs13112528	0.90[EUR][1000 genomes]
rs13132963	0.87[EUR][1000 genomes]
rs13135934	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs13142645	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs17310266	0.89[EUR][1000 genomes]
rs17310526	0.87[EUR][1000 genomes]
rs17376404	0.87[EUR][1000 genomes]
rs17376488	0.86[EUR][1000 genomes]
rs17623135	0.89[EUR][1000 genomes]
rs2087170	0.85[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs2129595	0.86[EUR][1000 genomes]
rs2169719	0.90[AFR][1000 genomes]
rs2171381	0.86[EUR][1000 genomes]
rs2306803	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2632399	0.89[EUR][1000 genomes]
rs2632401	0.81[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2632423	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2664871	0.81[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2664892	0.89[EUR][1000 genomes]
rs282448	0.88[EUR][1000 genomes]
rs282449	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs28398254	0.85[ASN][1000 genomes]
rs28417458	0.86[ASN][1000 genomes]
rs28613890	0.86[ASN][1000 genomes]
rs2902979	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs3106133	0.84[EUR][1000 genomes]
rs3106134	0.81[CEU][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs3106135	0.88[EUR][1000 genomes]
rs3106136	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs3113862	0.88[EUR][1000 genomes]
rs34145031	0.93[EUR][1000 genomes]
rs34383543	0.94[EUR][1000 genomes]
rs34396188	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34711938	0.87[EUR][1000 genomes]
rs35361491	0.91[EUR][1000 genomes]
rs35670996	0.91[EUR][1000 genomes]
rs35718240	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35995707	0.93[EUR][1000 genomes]
rs4693004	0.85[CEU][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs4693377	0.90[EUR][1000 genomes]
rs61004493	0.91[EUR][1000 genomes]
rs61514245	0.94[EUR][1000 genomes]
rs66581998	0.91[EUR][1000 genomes]
rs67552174	0.89[EUR][1000 genomes]
rs72663787	0.90[AFR][1000 genomes]
rs72663802	0.90[AFR][1000 genomes]
rs72665658	0.86[EUR][1000 genomes]
rs7435106	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs7442254	0.94[EUR][1000 genomes]
rs767657	0.86[EUR][1000 genomes]
rs8026	0.85[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
2	chr4:95130200-95194000	Weak transcription	Gastric	stomach
3	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
4	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:95152200-95202000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
12	chr4:95161400-95207000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:95162800-95192000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:95163000-95200200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:95163000-95210200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:95164400-95202800	Weak transcription	Pancreas	Pancrea
17	chr4:95164600-95200200	Weak transcription	Lung	lung
18	chr4:95164600-95200200	Weak transcription	Spleen	Spleen
19	chr4:95165000-95194200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:95165000-95198000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:95165400-95200000	Weak transcription	Fetal Brain Male	brain
22	chr4:95165400-95202800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:95167600-95200200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:95167800-95199800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:95167800-95200200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:95167800-95200200	Weak transcription	Fetal Stomach	stomach
27	chr4:95167800-95212800	Weak transcription	Esophagus	oesophagus
28	chr4:95168000-95214200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:95168200-95191800	Weak transcription	A549	lung
30	chr4:95168400-95193200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:95168600-95190800	Weak transcription	Aorta	Aorta
32	chr4:95168600-95198200	Weak transcription	Psoas Muscle	Psoas
33	chr4:95172600-95198400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:95172600-95202000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:95174400-95192200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr4:95174400-95193000	Weak transcription	HepG2	liver
37	chr4:95174400-95200000	Weak transcription	Fetal Kidney	kidney
38	chr4:95174400-95200200	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:95174600-95187200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:95174600-95194000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:95174600-95198000	Weak transcription	Brain Anterior Caudate	brain
42	chr4:95174600-95199200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:95174600-95199800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:95174800-95186400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:95174800-95190800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr4:95174800-95193200	Weak transcription	Brain Germinal Matrix	brain
47	chr4:95174800-95193200	Weak transcription	Ovary	ovary
48	chr4:95174800-95193400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:95174800-95195000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr4:95174800-95200000	Weak transcription	Brain Cingulate Gyrus	brain

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