Variant report

Variant	rs2306803
Chromosome Location	chr4:95161996-95161997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95138512..95140147-chr4:95160968..95162982,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11097411	0.85[EUR][1000 genomes]
rs11722476	0.90[EUR][1000 genomes]
rs12499309	0.91[EUR][1000 genomes]
rs12643901	0.90[EUR][1000 genomes]
rs12645192	0.91[EUR][1000 genomes]
rs12646184	0.91[EUR][1000 genomes]
rs13112528	0.88[EUR][1000 genomes]
rs13132963	0.85[EUR][1000 genomes]
rs13135934	0.88[EUR][1000 genomes]
rs13142645	0.88[EUR][1000 genomes]
rs17310266	0.87[EUR][1000 genomes]
rs17310526	0.85[EUR][1000 genomes]
rs17376404	0.85[EUR][1000 genomes]
rs17376488	0.84[EUR][1000 genomes]
rs17623135	0.87[EUR][1000 genomes]
rs2087170	0.94[EUR][1000 genomes]
rs2129595	0.84[EUR][1000 genomes]
rs2169719	0.90[AFR][1000 genomes]
rs2171381	0.83[EUR][1000 genomes]
rs2306802	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2632399	0.91[EUR][1000 genomes]
rs2632401	0.90[EUR][1000 genomes]
rs2632423	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2664871	0.90[EUR][1000 genomes]
rs2664892	0.91[EUR][1000 genomes]
rs282448	0.90[EUR][1000 genomes]
rs282449	0.90[EUR][1000 genomes]
rs28398254	0.85[ASN][1000 genomes]
rs28417458	0.86[ASN][1000 genomes]
rs28613890	0.86[ASN][1000 genomes]
rs2902979	0.92[EUR][1000 genomes]
rs3106133	0.86[EUR][1000 genomes]
rs3106134	0.88[EUR][1000 genomes]
rs3106135	0.90[EUR][1000 genomes]
rs3106136	0.90[EUR][1000 genomes]
rs3113862	0.90[EUR][1000 genomes]
rs34145031	0.91[EUR][1000 genomes]
rs34383543	0.91[EUR][1000 genomes]
rs34396188	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34711938	0.85[EUR][1000 genomes]
rs35361491	0.89[EUR][1000 genomes]
rs35670996	0.89[EUR][1000 genomes]
rs35718240	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35995707	0.91[EUR][1000 genomes]
rs4693004	0.91[EUR][1000 genomes]
rs4693377	0.92[EUR][1000 genomes]
rs61004493	0.93[EUR][1000 genomes]
rs61514245	0.91[EUR][1000 genomes]
rs66581998	0.89[EUR][1000 genomes]
rs67552174	0.86[EUR][1000 genomes]
rs72663787	0.90[AFR][1000 genomes]
rs72663802	0.90[AFR][1000 genomes]
rs72665658	0.88[EUR][1000 genomes]
rs7435106	0.91[EUR][1000 genomes]
rs7442254	0.92[EUR][1000 genomes]
rs767657	0.83[EUR][1000 genomes]
rs8026	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv1850963	chr4:95146281-95175682	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95130000-95176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:95130200-95162600	Weak transcription	Pancreas	Pancrea
3	chr4:95130200-95162600	Weak transcription	Small Intestine	intestine
4	chr4:95130200-95164000	Weak transcription	Spleen	Spleen
5	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
6	chr4:95130200-95194000	Weak transcription	Gastric	stomach
7	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
8	chr4:95131200-95164400	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:95131800-95169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:95134800-95162400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:95134800-95162800	Weak transcription	Hela-S3	cervix
13	chr4:95135200-95162600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:95135200-95162800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:95136600-95164800	Weak transcription	Fetal Brain Male	brain
16	chr4:95136600-95174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:95136800-95162600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:95137400-95162400	Weak transcription	Ovary	ovary
19	chr4:95137400-95162600	Weak transcription	Thymus	Thymus
20	chr4:95137400-95162800	Weak transcription	Psoas Muscle	Psoas
21	chr4:95137600-95162600	Weak transcription	Aorta	Aorta
22	chr4:95138200-95162400	Weak transcription	HSMMtube	muscle
23	chr4:95138400-95164200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:95140200-95167000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:95141000-95164400	Weak transcription	A549	lung
27	chr4:95141600-95162200	Weak transcription	Fetal Brain Female	brain
28	chr4:95142200-95164200	Weak transcription	NHLF	lung
29	chr4:95143400-95162200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:95145400-95175000	Strong transcription	Dnd41	blood
31	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:95146600-95175800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:95147800-95168400	Strong transcription	Fetal Thymus	thymus
36	chr4:95148000-95169400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:95148200-95180800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr4:95148400-95162600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:95148400-95162600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr4:95148800-95162200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:95148800-95162600	Weak transcription	Lung	lung
42	chr4:95148800-95164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:95148800-95167000	Weak transcription	Esophagus	oesophagus
44	chr4:95149000-95162200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr4:95150000-95162600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr4:95150800-95162600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:95151600-95170400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr4:95152000-95162600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:95152200-95163600	Weak transcription	Brain Cingulate Gyrus	brain

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