Variant report

Variant	rs35718240
Chromosome Location	chr4:95164030-95164031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95157684..95160378-chr4:95163793..95166793,3	K562	blood:
2	chr4:95149538..95151966-chr4:95163560..95166301,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11097411	0.88[EUR][1000 genomes]
rs11722476	0.92[EUR][1000 genomes]
rs12499309	0.94[EUR][1000 genomes]
rs12643901	0.89[EUR][1000 genomes]
rs12645192	0.94[EUR][1000 genomes]
rs12646184	0.93[EUR][1000 genomes]
rs13112528	0.91[EUR][1000 genomes]
rs13132963	0.88[EUR][1000 genomes]
rs13135934	0.91[EUR][1000 genomes]
rs13142645	0.91[EUR][1000 genomes]
rs17310266	0.89[EUR][1000 genomes]
rs17310526	0.88[EUR][1000 genomes]
rs17376404	0.88[EUR][1000 genomes]
rs17376488	0.87[EUR][1000 genomes]
rs17623135	0.90[EUR][1000 genomes]
rs2087170	0.92[EUR][1000 genomes]
rs2129595	0.86[EUR][1000 genomes]
rs2171381	0.86[EUR][1000 genomes]
rs2306802	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306803	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2632399	0.90[EUR][1000 genomes]
rs2632401	0.89[EUR][1000 genomes]
rs2632423	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2664871	0.89[EUR][1000 genomes]
rs2664892	0.89[EUR][1000 genomes]
rs282448	0.88[EUR][1000 genomes]
rs282449	0.88[EUR][1000 genomes]
rs28398254	0.83[ASN][1000 genomes]
rs28417458	0.85[ASN][1000 genomes]
rs28613890	0.85[ASN][1000 genomes]
rs2902979	0.95[EUR][1000 genomes]
rs3106133	0.85[EUR][1000 genomes]
rs3106134	0.86[EUR][1000 genomes]
rs3106135	0.88[EUR][1000 genomes]
rs3106136	0.89[EUR][1000 genomes]
rs3113862	0.89[EUR][1000 genomes]
rs34145031	0.93[EUR][1000 genomes]
rs34383543	0.94[EUR][1000 genomes]
rs34396188	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34711938	0.88[EUR][1000 genomes]
rs35361491	0.92[EUR][1000 genomes]
rs35670996	0.92[EUR][1000 genomes]
rs35995707	0.93[EUR][1000 genomes]
rs4693004	0.94[EUR][1000 genomes]
rs4693377	0.91[EUR][1000 genomes]
rs61004493	0.91[EUR][1000 genomes]
rs61514245	0.94[EUR][1000 genomes]
rs66581998	0.92[EUR][1000 genomes]
rs67552174	0.89[EUR][1000 genomes]
rs72665658	0.86[EUR][1000 genomes]
rs7435106	0.93[EUR][1000 genomes]
rs7442254	0.95[EUR][1000 genomes]
rs767657	0.86[EUR][1000 genomes]
rs8026	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv1850963	chr4:95146281-95175682	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95130000-95176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:95130200-95193000	Weak transcription	Right Ventricle	heart
3	chr4:95130200-95194000	Weak transcription	Gastric	stomach
4	chr4:95130200-95198200	Weak transcription	Colonic Mucosa	Colon
5	chr4:95131200-95164400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:95131600-95198200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:95131800-95169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:95136600-95164800	Weak transcription	Fetal Brain Male	brain
9	chr4:95136600-95174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:95138400-95164200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:95138800-95214400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:95140200-95167000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:95141000-95164400	Weak transcription	A549	lung
14	chr4:95142200-95164200	Weak transcription	NHLF	lung
15	chr4:95145400-95175000	Strong transcription	Dnd41	blood
16	chr4:95146000-95214200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:95146200-95214200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:95146200-95214400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:95146600-95175800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:95147800-95168400	Strong transcription	Fetal Thymus	thymus
21	chr4:95148000-95169400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:95148200-95180800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:95148800-95164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:95148800-95167000	Weak transcription	Esophagus	oesophagus
25	chr4:95151400-95214400	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:95151600-95170400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr4:95152200-95202000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:95152400-95164400	Weak transcription	Brain Substantia Nigra	brain
29	chr4:95152600-95174400	Weak transcription	Brain Angular Gyrus	brain
30	chr4:95153000-95169800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:95154200-95173000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:95154600-95168200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:95154600-95175800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr4:95154800-95168200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:95155000-95177400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:95155200-95169600	Strong transcription	NH-A	brain
37	chr4:95155400-95169200	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr4:95155400-95175800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:95155600-95169200	Strong transcription	Fetal Lung	lung
40	chr4:95155800-95168400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:95155800-95169200	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr4:95157000-95165600	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr4:95157400-95168600	Strong transcription	Placenta	Placenta
44	chr4:95157400-95168800	Strong transcription	Adipose Nuclei	Adipose
45	chr4:95157600-95168400	Strong transcription	Osteobl	bone
46	chr4:95157600-95168600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:95157600-95168800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr4:95157600-95172800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:95158000-95167800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:95158000-95169400	Strong transcription	Liver	Liver

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