Variant report

Variant	rs35686780
Chromosome Location	chr1:152898182-152898183
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10888519	0.94[EUR][1000 genomes]
rs12027303	0.94[EUR][1000 genomes]
rs12724858	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12737395	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12750261	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12755214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12756264	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34336093	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34889136	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3885994	0.84[EUR][1000 genomes]
rs71517761	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71626737	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71626738	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71626739	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71626740	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73008565	0.93[AFR][1000 genomes]
rs73008566	0.93[AFR][1000 genomes]
rs73008577	0.86[AFR][1000 genomes]
rs73008579	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv831592	chr1:152815054-152997162	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv998873	chr1:152869127-152975258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152896800-152905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:152897000-152901200	Weak transcription	HMEC	breast
3	chr1:152897000-152903000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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