Variant report

Variant	rs35689202
Chromosome Location	chr14:81743575-81743576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:81743571-81743612	A549	lung:	n/a	n/a
2	POLR2A	chr14:81742698-81743801	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:

Variant related genes	Relation type
STON2	TF binding region
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1025323	1.00[AMR][1000 genomes]
rs28452329	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34681244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36113401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7154812	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:81725000-81743600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
4	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
5	chr14:81730600-81744000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:81730800-81743600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:81732400-81743600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
9	chr14:81734800-81744000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:81735800-81746400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:81736000-81746000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:81736400-81746600	Weak transcription	Liver	Liver
14	chr14:81737000-81744200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:81737600-81748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:81739200-81743800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr14:81739600-81743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:81740200-81744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr14:81740600-81743600	Strong transcription	NHEK	skin
20	chr14:81740800-81745200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:81741600-81744400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:81741800-81743800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:81741800-81744400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:81741800-81744800	Strong transcription	K562	blood
25	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:81742000-81743600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:81742000-81743800	Genic enhancers	Fetal Muscle Leg	muscle
28	chr14:81742000-81743800	Enhancers	HepG2	liver
29	chr14:81742000-81744000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:81742000-81745000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr14:81742200-81745000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:81742400-81743600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:81742400-81744600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:81742600-81743600	Enhancers	Brain Anterior Caudate	brain
35	chr14:81742600-81743600	Enhancers	Brain Hippocampus Middle	brain
36	chr14:81742600-81743800	Enhancers	Ovary	ovary
37	chr14:81742600-81745200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:81742600-81746800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:81742600-81747800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:81742600-81748200	Weak transcription	Fetal Brain Female	brain
41	chr14:81742600-81763400	Weak transcription	Psoas Muscle	Psoas
42	chr14:81742800-81745200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr14:81743000-81744400	Genic enhancers	HMEC	breast
44	chr14:81743000-81744800	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr14:81743000-81744800	Strong transcription	Placenta	Placenta
46	chr14:81743000-81745000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:81743000-81745000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:81743000-81746800	Weak transcription	Brain Germinal Matrix	brain
49	chr14:81743200-81743600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:81743200-81743600	Weak transcription	Fetal Kidney	kidney

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