Variant report

Variant	rs7154812
Chromosome Location	chr14:81712258-81712259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1025323	1.00[AMR][1000 genomes]
rs28452329	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34681244	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35689202	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36113401	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8017276	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
2	nsv902118	chr14:81679650-81715989	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	n/a
3	nsv974355	chr14:81705202-81712801	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81711400-81712600	Enhancers	HSMM	muscle
2	chr14:81711600-81722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:81711800-81714600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:81712000-81713000	Enhancers	Dnd41	blood
5	chr14:81712000-81714200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:81712000-81714400	Enhancers	NHDF-Ad	bronchial
7	chr14:81712200-81713600	Enhancers	Ovary	ovary
8	chr14:81712200-81714400	Enhancers	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links