Variant report

Variant	rs35691292
Chromosome Location	chr11:36615075-36615076
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:36615033-36615083	BJ	skin:	n/a
2	chr11:36615033-36615083	NH-A	brain:	n/a
3	chr11:36615033-36615083	Caco-2	colon:	n/a
4	chr11:36615033-36615083	HUVEC	blood vessel:	n/a
5	chr11:36615033-36615083	NT2-D1	testis:	n/a
6	chr11:36615033-36615083	MCF-7	breast:	n/a
7	chr11:36615033-36615083	PFSK-1	brain:	n/a
8	chr11:36615033-36615083	SAEC	small airway:	n/a
9	chr11:36615033-36615083	MCF10A-Er-Src	breast:	n/a
10	chr11:36615033-36615083	HMEC	breast:	n/a
11	chr11:36615033-36615083	HEEpiC	esophagus:	n/a
12	chr11:36615033-36615083	HCT-116	colon:	n/a
13	chr11:36615033-36615083	Jurkat	blood:	n/a
14	chr11:36615033-36615083	AG09319	gingival:	n/a
15	chr11:36615033-36615083	HAEpiC	amniotic membrane:	n/a
16	chr11:36615033-36615083	HCF	heart:	n/a
17	chr11:36615033-36615083	IMR90	lung:	fetal
18	chr11:36615033-36615083	AG04450	lung:	fetal
19	chr11:36615033-36615083	SK-N-MC	brain:	n/a
20	chr11:36615033-36615083	HEK293	kidney:	embryo
21	chr11:36615033-36615083	ovcar-3	ovarian:	n/a
22	chr11:36615033-36615083	GM19239	blood:	n/a
23	chr11:36615033-36615083	H1-hESC	embryonic stem cell:	embryo
24	chr11:36615033-36615083	SK-N-SH_RA	brain:	n/a
25	chr11:36615033-36615083	ECC-1	luminal epithelium:	n/a
26	chr11:36615033-36615083	CMK	blood:	n/a
27	chr11:36615033-36615083	HIPEpiC	eye:	n/a
28	chr11:36615033-36615083	SKMC	muscle:	n/a
29	chr11:36615033-36615083	U87	brain:	n/a
30	chr11:36615033-36615083	ProgFib	skin:	n/a
31	chr11:36615033-36615083	AG10803	skin:	n/a
32	chr11:36615033-36615083	AoSMC	blood vessel:	n/a
33	chr11:36615033-36615083	Hepatocyte	liver:	n/a
34	chr11:36615033-36615083	NHDF-neo	bronchial:	n/a
35	chr11:36615033-36615083	HRE	kidney:	n/a
36	chr11:36615033-36615083	HRPEpiC	eye:	n/a
37	chr11:36615033-36615083	T-47D	breast:	n/a
38	chr11:36615033-36615083	GM06990	blood:	n/a
39	chr11:36615033-36615083	PANC-1	pancreas:	n/a
40	chr11:36615033-36615083	NHBE	bronchial:	n/a
41	chr11:36615033-36615083	A549	lung:	n/a
42	chr11:36615033-36615083	NB4	blood:	n/a
43	chr11:36615033-36615083	PrEC	prostate:	n/a
44	chr11:36615033-36615083	SK-N-SH	brain:	n/a
45	chr11:36615033-36615083	AG04449	skin:	fetal
46	chr11:36615033-36615083	HCM	heart:	n/a
47	chr11:36615033-36615083	HL-60	blood:	n/a
48	chr11:36615033-36615083	HCPEpiC	choroid plexus:	n/a
49	chr11:36615033-36615083	GM12892	blood:	n/a
50	chr11:36615033-36615083	GM12891	blood:	n/a

No data

Variant related genes	Relation type
C11orf74	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs331449	1.00[GIH][hapmap]
rs331456	1.00[GIH][hapmap]
rs4756327	1.00[GIH][hapmap]
rs496289	0.85[GIH][hapmap]
rs505296	0.85[GIH][hapmap]
rs520074	0.85[GIH][hapmap]
rs6484862	0.85[GIH][hapmap]
rs962353	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36611400-36616800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
2	chr11:36614200-36617200	Transcr. at gene 5' and 3'	Thymus	Thymus
3	chr11:36614200-36619600	Transcr. at gene 5' and 3'	Dnd41	blood

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