Variant report

Variant	rs4756327
Chromosome Location	chr11:36565141-36565142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36559925..36562026-chr11:36563187..36566000,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1515062	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1581279	1.00[EUR][1000 genomes]
rs2173394	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs230485	1.00[EUR][1000 genomes]
rs2458930	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2673017	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2673018	1.00[EUR][1000 genomes]
rs331431	1.00[EUR][1000 genomes]
rs331438	1.00[EUR][1000 genomes]
rs331449	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs331451	1.00[EUR][1000 genomes]
rs331452	1.00[EUR][1000 genomes]
rs331456	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs331458	1.00[EUR][1000 genomes]
rs331461	1.00[EUR][1000 genomes]
rs331473	1.00[EUR][1000 genomes]
rs34340782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34574486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34608958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35691292	1.00[GIH][hapmap]
rs4756326	1.00[YRI][hapmap]
rs496289	0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs505296	0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs510479	1.00[EUR][1000 genomes]
rs520074	0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs60287310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61475582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484862	0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6484864	0.95[AFR][1000 genomes]
rs6484865	1.00[YRI][hapmap]
rs692743	1.00[EUR][1000 genomes]
rs693068	1.00[EUR][1000 genomes]
rs7109588	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125448	1.00[EUR][1000 genomes]
rs962353	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv2760215	chr11:36559278-36573022	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links