Variant report

Variant	rs1515062
Chromosome Location	chr11:36562608-36562609
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:36514029..36514979-chr11:36562385..36563157,2	MCF-7	breast:
2	chr11:36536896..36537811-chr11:36562260..36562826,2	MCF-7	breast:
3	chr11:36536744..36537582-chr11:36562601..36563262,2	MCF-7	breast:
4	chr11:36531340..36531969-chr11:36562411..36563083,2	MCF-7	breast:
5	chr11:36530362..36534176-chr11:36559557..36562843,5	MCF-7	breast:
6	chr11:36531118..36531933-chr11:36562059..36562821,2	K562	blood:
7	chr11:36560056..36562642-chr11:36572222..36573907,2	K562	blood:

Variant related genes	Relation type
ENSG00000166349	Chromatin interaction
ENSG00000175104	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1581279	1.00[EUR][1000 genomes]
rs2173394	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs230485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2458930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2673017	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2673018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331449	1.00[AMR][1000 genomes]
rs331451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs331475	1.00[AMR][1000 genomes]
rs34340782	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34574486	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34608958	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4756326	1.00[YRI][hapmap]
rs4756327	1.00[YRI][hapmap]
rs496289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs505296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs510479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs520074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60287310	1.00[EUR][1000 genomes]
rs61475582	1.00[EUR][1000 genomes]
rs6484862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484864	0.95[AFR][1000 genomes]
rs6484865	1.00[YRI][hapmap]
rs692743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs693068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109588	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7125448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs962353	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv2760215	chr11:36559278-36573022	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36562200-36563200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:36562400-36562800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr11:36562400-36562800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:36562400-36562800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:36562400-36562800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:36562400-36562800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:36562400-36562800	Enhancers	Brain Angular Gyrus	brain
8	chr11:36562400-36562800	Active TSS	Brain Hippocampus Middle	brain
9	chr11:36562400-36562800	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr11:36562400-36562800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:36562400-36562800	Enhancers	Fetal Intestine Small	intestine
12	chr11:36562400-36563000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:36562400-36563000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:36562400-36563000	Enhancers	Brain Cingulate Gyrus	brain
15	chr11:36562400-36563000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:36562400-36563000	Enhancers	Thymus	Thymus
17	chr11:36562400-36563000	Active TSS	GM12878-XiMat	blood
18	chr11:36562400-36563000	Enhancers	HSMM	muscle
19	chr11:36562400-36563000	Enhancers	HSMMtube	muscle
20	chr11:36562400-36563000	Enhancers	HUVEC	blood vessel
21	chr11:36562400-36563000	Enhancers	K562	blood
22	chr11:36562400-36563200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:36562400-36563200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:36562400-36563200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:36562400-36563200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr11:36562400-36563200	Enhancers	Brain Anterior Caudate	brain
27	chr11:36562400-36563200	Enhancers	Fetal Thymus	thymus
28	chr11:36562400-36563400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr11:36562600-36562800	Enhancers	Colon Smooth Muscle	Colon
30	chr11:36562600-36562800	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr11:36562600-36563000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr11:36562600-36563000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:36562600-36563000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr11:36562600-36563000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:36562600-36563400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links