Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36526154..36527898-chr11:36582469..36585406,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1515062	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1581279	1.00[EUR][1000 genomes]
rs230485	1.00[EUR][1000 genomes]
rs2458930	1.00[EUR][1000 genomes]
rs2673017	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2673018	1.00[EUR][1000 genomes]
rs331431	1.00[EUR][1000 genomes]
rs331438	1.00[EUR][1000 genomes]
rs331443	0.82[YRI][hapmap]
rs331451	1.00[EUR][1000 genomes]
rs331452	1.00[EUR][1000 genomes]
rs331458	1.00[EUR][1000 genomes]
rs331461	1.00[EUR][1000 genomes]
rs331473	1.00[EUR][1000 genomes]
rs34340782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34392904	1.00[EUR][1000 genomes]
rs34574486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34608958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4756326	1.00[YRI][hapmap]
rs4756327	1.00[YRI][hapmap]
rs496289	1.00[EUR][1000 genomes]
rs505296	1.00[EUR][1000 genomes]
rs510479	1.00[EUR][1000 genomes]
rs520074	1.00[EUR][1000 genomes]
rs60225227	1.00[EUR][1000 genomes]
rs60287310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61475582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484862	1.00[EUR][1000 genomes]
rs6484864	0.95[AFR][1000 genomes]
rs6484865	1.00[YRI][hapmap]
rs692743	1.00[EUR][1000 genomes]
rs693068	1.00[EUR][1000 genomes]
rs7109588	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125448	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs962353	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36580400-36586000	Weak transcription	Liver	Liver
2	chr11:36581600-36586200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:36582000-36586000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:36582000-36587000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:36582200-36584000	Weak transcription	Thymus	Thymus
6	chr11:36582400-36583600	Enhancers	Dnd41	blood
7	chr11:36582400-36584800	Weak transcription	Fetal Thymus	thymus
8	chr11:36582400-36586200	Weak transcription	Aorta	Aorta

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