Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1515062	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1581279	1.00[EUR][1000 genomes]
rs2173394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs230485	1.00[EUR][1000 genomes]
rs2458930	1.00[EUR][1000 genomes]
rs2673017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2673018	1.00[EUR][1000 genomes]
rs331431	1.00[EUR][1000 genomes]
rs331438	1.00[EUR][1000 genomes]
rs331451	1.00[EUR][1000 genomes]
rs331452	1.00[EUR][1000 genomes]
rs331458	1.00[EUR][1000 genomes]
rs331461	1.00[EUR][1000 genomes]
rs331473	1.00[EUR][1000 genomes]
rs34340782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34608958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs496289	1.00[EUR][1000 genomes]
rs505296	1.00[EUR][1000 genomes]
rs510479	1.00[EUR][1000 genomes]
rs520074	1.00[EUR][1000 genomes]
rs60225227	1.00[EUR][1000 genomes]
rs60287310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61475582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484862	1.00[EUR][1000 genomes]
rs6484864	0.95[AFR][1000 genomes]
rs692743	1.00[EUR][1000 genomes]
rs693068	1.00[EUR][1000 genomes]
rs7109588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125448	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36579400-36580800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr11:36579600-36582400	Flanking Active TSS	Dnd41	blood
3	chr11:36580000-36580800	Active TSS	Primary T cells fromperipheralblood	blood
4	chr11:36580000-36580800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:36580000-36580800	Active TSS	GM12878-XiMat	blood
6	chr11:36580000-36581000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:36580400-36581000	Enhancers	Primary T cells from cord blood	blood
8	chr11:36580400-36581400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:36580400-36586000	Weak transcription	Liver	Liver
10	chr11:36580600-36581000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:36580600-36581000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr11:36580600-36581600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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