Variant report
| Variant | rs331451 |
|---|---|
| Chromosome Location | chr11:36536307-36536308 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000166349 | Chromatin interaction |
| ENSG00000175104 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1515062 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2173394 | 1.00[EUR][1000 genomes] |
| rs230485 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2458930 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2673017 | 1.00[EUR][1000 genomes] |
| rs2673018 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs331431 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs331438 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs331449 | 0.81[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs331452 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs331456 | 1.00[YRI][hapmap] |
| rs331458 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs331461 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs331473 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs331475 | 1.00[AMR][1000 genomes] |
| rs34340782 | 1.00[EUR][1000 genomes] |
| rs34574486 | 1.00[EUR][1000 genomes] |
| rs34608958 | 1.00[EUR][1000 genomes] |
| rs496289 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs505296 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs510479 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs520074 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60287310 | 1.00[EUR][1000 genomes] |
| rs61475582 | 1.00[EUR][1000 genomes] |
| rs6484862 | 0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs692743 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs693068 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7109588 | 1.00[EUR][1000 genomes] |
| rs7125448 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv467791 | chr11:36108497-36999385 | Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv554003 | chr11:36108497-36999385 | ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
