Variant report

Variant	rs35694450
Chromosome Location	chr7:39670887-39670888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39670051..39673950-chr7:39675213..39677568,3	K562	blood:
2	chr7:39670051..39674974-chr7:39675213..39680609,7	K562	blood:
3	chr7:39666780..39669048-chr7:39669920..39673887,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10232064	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10254562	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11769962	0.92[ASN][1000 genomes]
rs11769987	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13224312	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2008819	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2158547	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4723888	0.93[ASN][1000 genomes]
rs6462938	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6462939	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6948088	0.93[ASN][1000 genomes]
rs7806633	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7806769	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv887971	chr7:39662268-39745775	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv887972	chr7:39666267-39733688	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39664400-39672200	Weak transcription	Pancreas	Pancrea
2	chr7:39664400-39674600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:39664400-39674600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:39664400-39674800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:39664400-39678400	Weak transcription	Placenta	Placenta
6	chr7:39664400-39679600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:39664800-39671000	Weak transcription	Gastric	stomach
8	chr7:39664800-39671400	Weak transcription	Fetal Thymus	thymus
9	chr7:39664800-39671400	Weak transcription	Spleen	Spleen
10	chr7:39664800-39671600	Weak transcription	Aorta	Aorta
11	chr7:39664800-39673200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:39665000-39673600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:39665200-39671400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:39665200-39672000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:39665200-39672600	Weak transcription	Thymus	Thymus
16	chr7:39665200-39677800	Weak transcription	Brain Substantia Nigra	brain
17	chr7:39665400-39671200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr7:39665400-39672200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr7:39665400-39679800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:39665600-39673400	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:39665600-39680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:39665600-39682200	Weak transcription	Liver	Liver
23	chr7:39666200-39671400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:39666200-39671400	Weak transcription	Lung	lung
25	chr7:39666200-39673200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:39666200-39674000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:39666200-39678200	Weak transcription	Brain Germinal Matrix	brain
28	chr7:39666200-39679000	Weak transcription	Esophagus	oesophagus
29	chr7:39666200-39681800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:39666200-39694400	Weak transcription	Fetal Brain Female	brain
31	chr7:39666400-39671400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:39666400-39671400	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:39666400-39671400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:39666400-39672000	Weak transcription	Fetal Brain Male	brain
35	chr7:39666600-39671400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:39666800-39681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:39667200-39698800	Weak transcription	Fetal Kidney	kidney
38	chr7:39667400-39671000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr7:39667400-39671400	Weak transcription	Ovary	ovary
40	chr7:39667400-39671400	Weak transcription	Right Atrium	heart
41	chr7:39667400-39676000	Weak transcription	Colonic Mucosa	Colon
42	chr7:39667600-39671200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:39667600-39671400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr7:39667600-39673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:39667600-39678800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr7:39667800-39671000	Weak transcription	HMEC	breast
47	chr7:39667800-39671000	Weak transcription	NHLF	lung
48	chr7:39667800-39671000	Weak transcription	Osteobl	bone
49	chr7:39667800-39671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:39667800-39671200	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links