Variant report

Variant	rs35701071
Chromosome Location	chr7:139796335-139796336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:139796284-139796380	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:139788956..139793444-chr7:139795382..139798416,5	K562	blood:
2	chr7:139791475..139794327-chr7:139794572..139796882,2	K562	blood:
3	chr7:139796233..139797886-chr7:139801141..139802756,2	K562	blood:

Variant related genes	Relation type
ENSG00000251728	TF binding region
KDM7A	TF binding region
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12703488	1.00[AFR][1000 genomes]
rs13230173	1.00[AFR][1000 genomes]
rs13242576	1.00[AFR][1000 genomes]
rs62490101	1.00[AFR][1000 genomes]
rs8192856	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139777000-139799200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:139778800-139799400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:139779000-139812000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:139779400-139811200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:139782800-139798200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:139782800-139808200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:139783000-139808800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:139785000-139839600	Weak transcription	NHDF-Ad	bronchial
9	chr7:139785400-139803000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:139785400-139803200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:139786400-139802800	Strong transcription	Placenta	Placenta
12	chr7:139786400-139803000	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr7:139786400-139803200	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr7:139786600-139802000	Strong transcription	Fetal Intestine Large	intestine
15	chr7:139786600-139802400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr7:139786600-139803000	Strong transcription	Adipose Nuclei	Adipose
17	chr7:139786600-139803000	Strong transcription	Liver	Liver
18	chr7:139787000-139803000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr7:139787200-139802000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:139787800-139802600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:139788000-139803000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:139788200-139803200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr7:139788400-139802200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:139788400-139803000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:139788800-139803000	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:139788800-139803200	Strong transcription	Primary T cells from cord blood	blood
27	chr7:139789000-139803000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:139789200-139799400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:139789200-139803000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:139789200-139833200	Weak transcription	NH-A	brain
31	chr7:139789400-139802200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:139789400-139802400	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:139789400-139803000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr7:139789400-139803000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:139789600-139796400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:139789600-139798200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:139789600-139801600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:139789600-139802000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:139789600-139803000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:139789600-139803000	Strong transcription	Primary B cells from cord blood	blood
41	chr7:139789600-139810800	Weak transcription	A549	lung
42	chr7:139789800-139802000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr7:139789800-139803000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:139789800-139803200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr7:139789800-139814400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:139790000-139796600	Strong transcription	Fetal Muscle Leg	muscle
47	chr7:139790000-139798400	Strong transcription	Osteobl	bone
48	chr7:139790000-139800200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr7:139790000-139801600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:139790000-139801600	Strong transcription	Dnd41	blood

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