Variant report

Variant	rs8192856
Chromosome Location	chr7:139690919-139690920
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139306454..139308414-chr7:139689664..139691975,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12703488	1.00[AFR][1000 genomes]
rs13230173	1.00[AFR][1000 genomes]
rs13242576	1.00[AFR][1000 genomes]
rs35701071	1.00[AFR][1000 genomes]
rs62490101	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139652200-139691600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr7:139672000-139704400	Weak transcription	Lung	lung
3	chr7:139679200-139695000	Weak transcription	Esophagus	oesophagus
4	chr7:139681000-139717800	Weak transcription	Thymus	Thymus
5	chr7:139685000-139691000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:139685000-139691200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:139685000-139691200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:139687000-139691400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:139689000-139694400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:139689600-139701800	Weak transcription	Fetal Kidney	kidney
11	chr7:139690000-139692000	Strong transcription	Spleen	Spleen
12	chr7:139690000-139694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:139690200-139691800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:139690200-139694200	Weak transcription	Fetal Lung	lung
15	chr7:139690400-139692200	Bivalent Enhancer	HepG2	liver
16	chr7:139690400-139694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:139690600-139691000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr7:139690600-139692200	Weak transcription	Fetal Thymus	thymus
19	chr7:139690800-139691000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:139690800-139692600	Enhancers	Fetal Muscle Trunk	muscle
21	chr7:139690800-139705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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