Variant report

Variant	rs35701632
Chromosome Location	chr19:18896087-18896088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:18893741..18897746-chr19:18945981..18952333,7	K562	blood:
2	chr19:18895540..18898412-chr19:18899953..18903266,3	MCF-7	breast:
3	chr19:18894261..18896592-chr19:18970535..18972363,2	K562	blood:
4	chr19:18893606..18897307-chr19:18942633..18945318,6	K562	blood:
5	chr19:18895462..18897674-chr19:18946976..18949711,3	K562	blood:
6	chr19:18895143..18898266-chr19:18900658..18903454,3	K562	blood:
7	chr19:18893606..18896824-chr19:18942185..18945318,5	K562	blood:
8	chr19:18885317..18890245-chr19:18892616..18897433,6	MCF-7	breast:
9	chr19:18894270..18897245-chr19:18901318..18904451,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000005007	Chromatin interaction
ENSG00000105664	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10038	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12052183	0.98[ASN][1000 genomes]
rs12327738	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8104411	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911282	chr19:18624964-18928480	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv911293	chr19:18872917-19050957	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv911294	chr19:18872917-19093619	Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv911295	chr19:18874483-18902592	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv911296	chr19:18874483-18915988	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv833777	chr19:18875936-19031076	Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18873800-18896200	Weak transcription	Brain Angular Gyrus	brain
2	chr19:18887600-18899200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr19:18893000-18896200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr19:18895000-18897200	ZNF genes & repeats	Spleen	Spleen
5	chr19:18895600-18896200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:18895600-18896200	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr19:18895600-18896200	Active TSS	Hela-S3	cervix
8	chr19:18895600-18896400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:18895600-18896400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:18895600-18896400	Enhancers	Lung	lung
11	chr19:18895600-18896600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
12	chr19:18895600-18896600	Enhancers	Esophagus	oesophagus
13	chr19:18895600-18896800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr19:18895600-18897200	Bivalent Enhancer	Placenta	Placenta
15	chr19:18895600-18897400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr19:18895600-18899000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr19:18895600-18902400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr19:18895800-18896200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr19:18895800-18896200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
20	chr19:18895800-18896200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
21	chr19:18895800-18896200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr19:18895800-18896200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr19:18895800-18896200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr19:18895800-18896200	Bivalent Enhancer	Brain Germinal Matrix	brain
25	chr19:18895800-18896200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
26	chr19:18895800-18896200	Bivalent Enhancer	Colonic Mucosa	Colon
27	chr19:18895800-18896200	Bivalent Enhancer	Fetal Intestine Large	intestine
28	chr19:18895800-18896200	Bivalent Enhancer	Fetal Intestine Small	intestine
29	chr19:18895800-18896200	Bivalent Enhancer	Fetal Stomach	stomach
30	chr19:18895800-18896200	Enhancers	Left Ventricle	heart
31	chr19:18895800-18896200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
32	chr19:18895800-18896200	Enhancers	A549	lung
33	chr19:18895800-18896200	Active TSS	HSMM	muscle
34	chr19:18895800-18896200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
35	chr19:18895800-18896400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
36	chr19:18895800-18896400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr19:18895800-18896400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr19:18895800-18896400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:18895800-18896400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr19:18895800-18896400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
41	chr19:18895800-18896400	Enhancers	Right Atrium	heart
42	chr19:18895800-18896600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
43	chr19:18895800-18896600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr19:18895800-18896600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
45	chr19:18895800-18896600	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr19:18895800-18896600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr19:18895800-18896600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr19:18895800-18896600	Bivalent Enhancer	Fetal Brain Male	brain
49	chr19:18895800-18896600	Bivalent Enhancer	Fetal Heart	heart
50	chr19:18895800-18896600	Enhancers	Gastric	stomach

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