Variant report

Variant	rs8104411
Chromosome Location	chr19:18889702-18889703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:18875448..18876988-chr19:18887590..18889948,2	MCF-7	breast:
2	chr19:18885317..18890245-chr19:18892616..18897433,6	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10038	0.92[CEU][hapmap];0.88[CHB][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12052183	1.00[ASN][1000 genomes]
rs12327738	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35701632	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4808855	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911282	chr19:18624964-18928480	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv911293	chr19:18872917-19050957	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv911294	chr19:18872917-19093619	Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv911295	chr19:18874483-18902592	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv911296	chr19:18874483-18915988	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv833777	chr19:18875936-19031076	Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3423006	chr19:18886977-18889825	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18854600-18895800	Weak transcription	Right Atrium	heart
2	chr19:18865600-18894600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr19:18865600-18896000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr19:18868200-18890600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:18873800-18895600	Weak transcription	Ovary	ovary
6	chr19:18873800-18896200	Weak transcription	Brain Angular Gyrus	brain
7	chr19:18880600-18895800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr19:18880800-18892600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr19:18882000-18890600	Weak transcription	Brain Anterior Caudate	brain
10	chr19:18884200-18893000	Weak transcription	Esophagus	oesophagus
11	chr19:18887400-18892600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr19:18887400-18895600	Weak transcription	Lung	lung
13	chr19:18887600-18894000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:18887600-18899200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr19:18887800-18893000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr19:18887800-18893000	Weak transcription	HSMMtube	muscle
17	chr19:18887800-18895800	Weak transcription	Pancreas	Pancrea
18	chr19:18888000-18891400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr19:18888000-18892200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr19:18888000-18895800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:18888200-18890000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:18888200-18895800	Weak transcription	Gastric	stomach
23	chr19:18888600-18892200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr19:18888800-18889800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr19:18888800-18895000	Weak transcription	Spleen	Spleen
26	chr19:18889000-18891200	Weak transcription	Right Ventricle	heart
27	chr19:18889200-18890600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr19:18889400-18890200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:18889600-18890000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:18889600-18891200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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