Variant report

Variant	rs35719201
Chromosome Location	chr5:15693726-15693727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:15691207..15693876-chr5:15698019..15699867,2	K562	blood:
2	chr5:15691412..15693844-chr5:15721863..15723411,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10866514	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11133821	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11748790	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11750054	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11951416	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12152734	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153463	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12153747	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180702	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13358928	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16867538	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2937074	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2937075	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34308971	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35167698	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4146556	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235555	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4273604	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4312881	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4318779	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4484432	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4568364	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4574543	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4576146	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4701638	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4701639	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4701641	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4702102	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6554897	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862949	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6892021	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6892414	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7709102	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv597263	chr5:15672137-15720478	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv461983	chr5:15674635-15720106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv597264	chr5:15674635-15720106	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv432718	chr5:15688927-15723346	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15684000-15695200	Weak transcription	HUVEC	blood vessel
2	chr5:15684600-15694000	Weak transcription	Fetal Kidney	kidney
3	chr5:15686600-15694400	Weak transcription	Fetal Lung	lung
4	chr5:15687800-15694200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:15687800-15694200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:15688000-15694200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:15688400-15704200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:15690200-15695000	Enhancers	NHDF-Ad	bronchial
9	chr5:15690800-15695800	Enhancers	Brain Anterior Caudate	brain
10	chr5:15690800-15696200	Enhancers	Ovary	ovary
11	chr5:15690800-15696400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:15691000-15694600	Weak transcription	NH-A	brain
13	chr5:15691400-15694200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:15691400-15694400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:15691400-15695200	Weak transcription	Aorta	Aorta
16	chr5:15691600-15694000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:15691600-15694000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:15691600-15694200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:15691600-15694200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:15691800-15693800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:15691800-15694200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:15691800-15694200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:15691800-15694200	Weak transcription	Adipose Nuclei	Adipose
24	chr5:15691800-15694800	Weak transcription	HSMM	muscle
25	chr5:15691800-15695000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:15692000-15694400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:15692000-15694600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:15692000-15694600	Weak transcription	Osteobl	bone
29	chr5:15692200-15694000	Weak transcription	Brain Angular Gyrus	brain
30	chr5:15692200-15694200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr5:15692200-15694200	Weak transcription	HSMMtube	muscle
32	chr5:15692200-15694600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr5:15692400-15694200	Weak transcription	Esophagus	oesophagus
34	chr5:15692400-15694400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:15692600-15695400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr5:15692600-15695800	Enhancers	Brain Hippocampus Middle	brain
37	chr5:15692600-15696200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr5:15692800-15694600	Enhancers	Right Ventricle	heart
39	chr5:15692800-15696000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:15693000-15694000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:15693000-15694600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:15693000-15694800	Enhancers	Right Atrium	heart
43	chr5:15693000-15696400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:15693200-15694200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:15693200-15694600	Enhancers	Left Ventricle	heart
46	chr5:15693200-15695200	Weak transcription	Lung	lung
47	chr5:15693200-15695600	Enhancers	Brain Substantia Nigra	brain
48	chr5:15693200-15701000	Enhancers	Fetal Heart	heart
49	chr5:15693400-15694400	Enhancers	Spleen	Spleen
50	chr5:15693400-15696200	Enhancers	Colon Smooth Muscle	Colon

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