Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11209795	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12727814	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1517759	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1607275	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1889298	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs357199	0.95[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs357200	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs357202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs357206	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs357208	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs357209	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs357210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs357211	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs357216	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs357222	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs357225	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs357228	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs357234	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs357237	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6680901	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs672999	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs928615	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv916508	chr1:71777392-72046388	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv546474	chr1:71793221-72040354	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72026800-72029200	Enhancers	Colon Smooth Muscle	Colon
2	chr1:72027400-72030800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:72027400-72031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:72027600-72031000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:72027800-72030800	Weak transcription	NHEK	skin
6	chr1:72028000-72030600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:72028000-72030600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:72028200-72030800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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