Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1041639	0.91[CEU][hapmap]
rs11209793	0.91[CEU][hapmap]
rs12058909	0.91[CEU][hapmap]
rs12727814	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1517759	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1607275	0.99[ASN][1000 genomes]
rs17091348	0.91[CEU][hapmap]
rs1889298	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs357199	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs357200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs357202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs357203	0.88[ASN][1000 genomes]
rs357206	0.99[ASN][1000 genomes]
rs357208	0.88[ASN][1000 genomes]
rs357209	0.88[ASN][1000 genomes]
rs357210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs357211	0.87[ASN][1000 genomes]
rs357214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs357216	0.85[ASN][1000 genomes]
rs357222	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs357225	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs357228	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs357233	0.91[CEU][hapmap]
rs357234	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs357237	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs672999	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv916508	chr1:71777392-72046388	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv546474	chr1:71793221-72040354	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1003527	chr1:71989558-72025236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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