Variant report

Variant	rs35722922
Chromosome Location	chr2:47002226-47002227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:47000943..47003874-chr2:47028312..47030730,2	MCF-7	breast:
2	chr2:46995520..46997154-chr2:47000594..47003342,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1058157	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1109380	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11676737	0.89[AMR][1000 genomes]
rs11680875	0.86[ASN][1000 genomes]
rs11695058	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12998753	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12998762	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12999586	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13025595	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13025984	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13031872	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13429704	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17822019	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17822294	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2346878	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34401107	0.89[AMR][1000 genomes]
rs34767235	0.81[EUR][1000 genomes]
rs35158352	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35825831	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36071056	0.82[EUR][1000 genomes]
rs3829835	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4952842	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4952843	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4953419	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55689263	0.82[EUR][1000 genomes]
rs6738426	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7562173	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7584870	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7594523	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs897530	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
5	nsv213378	chr2:47001834-47006121	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46981400-47006800	Weak transcription	Psoas Muscle	Psoas
2	chr2:46985600-47008200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:46987400-47005600	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:46987400-47005600	Weak transcription	Left Ventricle	heart
5	chr2:46987600-47006000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:46992400-47005400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:46996000-47005200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:46998800-47002400	Weak transcription	Ovary	ovary
9	chr2:46998800-47005600	Weak transcription	Fetal Brain Male	brain
10	chr2:46999000-47002600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:46999800-47004000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:47000800-47005000	Weak transcription	HepG2	liver
13	chr2:47001000-47003200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:47001000-47004000	Enhancers	NHDF-Ad	bronchial
15	chr2:47001000-47008600	Enhancers	Osteobl	bone
16	chr2:47001800-47003200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr2:47001800-47004000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:47002000-47004400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:47002000-47004600	Enhancers	A549	lung
20	chr2:47002200-47002800	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links