Variant report

Variant	rs35725247
Chromosome Location	chr1:222880167-222880168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:222870770..222873597-chr1:222878592..222880352,2	K562	blood:
2	chr1:222874210..222877170-chr1:222877743..222880359,4	K562	blood:
3	chr1:222874913..222877170-chr1:222878286..222880831,4	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10495198	0.81[ASN][1000 genomes]
rs1133220	0.89[ASN][1000 genomes]
rs12043288	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12138316	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12749296	0.88[EUR][1000 genomes]
rs17011666	0.85[ASN][1000 genomes]
rs17011681	0.87[ASN][1000 genomes]
rs17163313	0.85[ASN][1000 genomes]
rs17163345	0.86[ASN][1000 genomes]
rs17163358	0.86[ASN][1000 genomes]
rs17163360	0.86[ASN][1000 genomes]
rs17163363	0.87[ASN][1000 genomes]
rs17465637	0.81[ASN][1000 genomes]
rs17465940	0.83[ASN][1000 genomes]
rs17465982	0.84[ASN][1000 genomes]
rs17532708	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1909195	0.83[ASN][1000 genomes]
rs2068814	0.88[EUR][1000 genomes]
rs2133187	0.86[ASN][1000 genomes]
rs2133189	0.86[ASN][1000 genomes]
rs2270707	0.83[ASN][1000 genomes]
rs2291832	0.87[ASN][1000 genomes]
rs2291834	0.87[ASN][1000 genomes]
rs2378603	0.86[EUR][1000 genomes]
rs2378607	0.90[EUR][1000 genomes]
rs28654270	0.86[EUR][1000 genomes]
rs28709375	0.80[ASN][1000 genomes]
rs28765200	0.85[EUR][1000 genomes]
rs34032254	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34885880	0.88[EUR][1000 genomes]
rs35158675	0.85[ASN][1000 genomes]
rs35175385	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35300015	0.86[EUR][1000 genomes]
rs35626308	0.85[ASN][1000 genomes]
rs35700460	0.86[ASN][1000 genomes]
rs3748626	0.85[ASN][1000 genomes]
rs4282830	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4575092	0.89[ASN][1000 genomes]
rs4846384	0.84[ASN][1000 genomes]
rs61824331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61825253	0.87[EUR][1000 genomes]
rs61825254	0.87[EUR][1000 genomes]
rs61825258	0.83[EUR][1000 genomes]
rs61825259	0.87[EUR][1000 genomes]
rs6700083	0.85[EUR][1000 genomes]
rs67180937	0.87[ASN][1000 genomes]
rs71524942	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873205	chr1:222718718-222923351	Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222835200-222884600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:222839000-222884600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:222839600-222884600	Weak transcription	Esophagus	oesophagus
4	chr1:222840000-222884600	Weak transcription	Colonic Mucosa	Colon
5	chr1:222841200-222883400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:222841400-222883200	Weak transcription	Fetal Heart	heart
7	chr1:222845000-222884600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:222849400-222883200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:222852400-222883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:222855200-222884600	Weak transcription	Pancreas	Pancrea
11	chr1:222855600-222883800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:222860000-222884600	Weak transcription	Left Ventricle	heart
13	chr1:222860200-222883000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:222860200-222883000	Weak transcription	Hela-S3	cervix
15	chr1:222860200-222883200	Weak transcription	Brain Anterior Caudate	brain
16	chr1:222860200-222883600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:222860200-222883800	Weak transcription	Fetal Kidney	kidney
18	chr1:222860200-222884000	Weak transcription	Brain Angular Gyrus	brain
19	chr1:222860200-222884200	Weak transcription	Brain Substantia Nigra	brain
20	chr1:222860200-222884400	Weak transcription	Placenta	Placenta
21	chr1:222860200-222884600	Weak transcription	Aorta	Aorta
22	chr1:222860200-222884600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:222860200-222884600	Weak transcription	Gastric	stomach
24	chr1:222860200-222884600	Weak transcription	Lung	lung
25	chr1:222860600-222880600	Weak transcription	Ovary	ovary
26	chr1:222860600-222882400	Weak transcription	Small Intestine	intestine
27	chr1:222860600-222884200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:222861000-222885000	Weak transcription	Spleen	Spleen
29	chr1:222866600-222883000	Weak transcription	Fetal Brain Male	brain
30	chr1:222866800-222883800	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:222867200-222882600	Weak transcription	HepG2	liver
32	chr1:222869400-222883200	Weak transcription	GM12878-XiMat	blood
33	chr1:222873600-222883200	Weak transcription	Brain Germinal Matrix	brain
34	chr1:222873800-222883000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr1:222873800-222883200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr1:222873800-222884600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr1:222874000-222883400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr1:222874000-222884600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:222874600-222883600	Weak transcription	Fetal Stomach	stomach
40	chr1:222874800-222883600	Weak transcription	Thymus	Thymus
41	chr1:222875200-222883200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:222876200-222881800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:222876200-222883000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr1:222876200-222883000	Weak transcription	Adipose Nuclei	Adipose
45	chr1:222876200-222883000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr1:222876200-222883200	Weak transcription	Stomach Mucosa	stomach
47	chr1:222876200-222883400	Weak transcription	Liver	Liver
48	chr1:222876200-222883600	Weak transcription	Fetal Intestine Large	intestine
49	chr1:222876200-222883800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr1:222876200-222884000	Weak transcription	Rectal Mucosa Donor 31	rectum

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