Variant report

Variant	rs35737003
Chromosome Location	chr1:113669895-113669896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10442680	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10494148	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494149	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494150	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494152	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10494153	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10776764	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11102590	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11102591	0.87[EUR][1000 genomes]
rs12070586	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072108	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12073607	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12123070	0.85[EUR][1000 genomes]
rs12123194	0.85[EUR][1000 genomes]
rs12123876	0.85[EUR][1000 genomes]
rs12125209	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12125253	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12125281	0.85[EUR][1000 genomes]
rs12125282	0.85[EUR][1000 genomes]
rs12126040	0.85[EUR][1000 genomes]
rs12126180	0.85[EUR][1000 genomes]
rs12126412	0.85[EUR][1000 genomes]
rs12126415	0.85[EUR][1000 genomes]
rs12127119	0.85[EUR][1000 genomes]
rs12127186	0.85[EUR][1000 genomes]
rs12129741	0.85[EUR][1000 genomes]
rs12129773	0.85[EUR][1000 genomes]
rs12129924	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12130429	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12130787	0.85[EUR][1000 genomes]
rs12131406	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12132547	0.85[EUR][1000 genomes]
rs12133159	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12133521	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12134261	0.85[EUR][1000 genomes]
rs12134347	0.87[EUR][1000 genomes]
rs12136369	0.85[EUR][1000 genomes]
rs12137440	0.85[EUR][1000 genomes]
rs12140812	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12141374	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12141890	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1216791	0.85[EUR][1000 genomes]
rs1216796	0.85[EUR][1000 genomes]
rs1216872	0.83[EUR][1000 genomes]
rs1216873	0.80[EUR][1000 genomes]
rs12404563	0.86[EUR][1000 genomes]
rs12405087	0.85[EUR][1000 genomes]
rs12723657	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12727968	0.93[ASN][1000 genomes]
rs12728957	0.85[EUR][1000 genomes]
rs12732564	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12736831	0.85[EUR][1000 genomes]
rs12745847	0.85[EUR][1000 genomes]
rs12748429	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12757593	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760482	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1316767	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1324893	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1661	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17031099	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17031158	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17031160	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17497065	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1933656	0.87[EUR][1000 genomes]
rs1933660	0.85[EUR][1000 genomes]
rs1999905	0.85[EUR][1000 genomes]
rs1999906	0.85[EUR][1000 genomes]
rs2185105	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2185106	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2359709	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2359710	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2359711	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34236373	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34441710	0.85[EUR][1000 genomes]
rs35368423	0.85[EUR][1000 genomes]
rs35470019	0.85[EUR][1000 genomes]
rs35793987	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35822819	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36049267	0.86[EUR][1000 genomes]
rs4240536	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4427400	0.86[EUR][1000 genomes]
rs4630126	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839290	0.87[EUR][1000 genomes]
rs4839293	0.83[EUR][1000 genomes]
rs4839295	0.86[EUR][1000 genomes]
rs4839296	0.84[EUR][1000 genomes]
rs4839297	0.85[EUR][1000 genomes]
rs56204018	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537773	0.87[EUR][1000 genomes]
rs6537777	0.85[EUR][1000 genomes]
rs6683099	0.85[EUR][1000 genomes]
rs67028986	0.85[EUR][1000 genomes]
rs67038449	0.85[EUR][1000 genomes]
rs72683494	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72685622	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749956	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513596	0.85[EUR][1000 genomes]
rs7513698	0.85[EUR][1000 genomes]
rs7515810	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7521854	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7540970	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7543653	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548091	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551138	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556148	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556534	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs946220	0.82[EUR][1000 genomes]
rs9628702	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002971	chr1:112924725-113740584	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv535059	chr1:112924725-113740584	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv1010276	chr1:113123932-113740584	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1012119	chr1:113214869-113759081	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	nsv535060	chr1:113214869-113759081	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv529238	chr1:113229946-113759080	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
7	nsv999915	chr1:113360145-113684833	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
8	esv18293	chr1:113375437-113852815	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv1007045	chr1:113425222-113839910	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
10	nsv427719	chr1:113570229-114078388	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113633600-113672600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:113633800-113670000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr1:113633800-113672600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:113634200-113670000	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:113634200-113671400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:113634200-113673000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:113634400-113672600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr1:113634600-113670000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:113634600-113671200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:113634600-113671600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr1:113634600-113673000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:113636000-113671200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:113636000-113671400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:113636000-113671400	Strong transcription	Fetal Thymus	thymus
15	chr1:113636000-113671600	Strong transcription	Duodenum Mucosa	Duodenum
16	chr1:113636400-113670000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr1:113643600-113670000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:113646400-113672600	Strong transcription	Placenta	Placenta
19	chr1:113650800-113671000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:113651000-113671200	Strong transcription	Fetal Muscle Trunk	muscle
21	chr1:113653600-113673000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:113656600-113672400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:113656800-113670000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:113656800-113671600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:113657000-113670000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:113657000-113671200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr1:113657000-113673000	Strong transcription	Primary T cells from cord blood	blood
28	chr1:113657000-113673400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:113662600-113675000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:113663400-113683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:113663600-113670000	Strong transcription	GM12878-XiMat	blood
32	chr1:113663600-113671400	Strong transcription	HMEC	breast
33	chr1:113665200-113670200	Strong transcription	NHLF	lung
34	chr1:113666200-113671600	Strong transcription	Fetal Brain Female	brain
35	chr1:113667000-113672000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:113667200-113670000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:113667200-113670000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:113667200-113670000	Strong transcription	Osteobl	bone
39	chr1:113667200-113670200	Strong transcription	Adipose Nuclei	Adipose
40	chr1:113667200-113670600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr1:113667200-113671200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:113667200-113671400	Strong transcription	HSMM	muscle
43	chr1:113667200-113675000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:113667200-113675200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:113667200-113675800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr1:113667200-113678400	Weak transcription	Pancreas	Pancrea
47	chr1:113667200-113682400	Weak transcription	Fetal Brain Male	brain
48	chr1:113667200-113683400	Weak transcription	Esophagus	oesophagus
49	chr1:113667200-113683400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:113667200-113683400	Weak transcription	A549	lung

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