Variant report

Variant	rs35737208
Chromosome Location	chr3:46583022-46583023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46582873..46586773-chr3:46587066..46590997,5	K562	blood:
2	chr3:46582368..46586773-chr3:46586902..46591684,9	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11705987	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11710224	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12629867	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17220622	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35167803	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876737	chr3:46569721-46595431	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35737208	TDGF1	cis	Adipose Subcutaneous	GTEx
rs35737208	TDGF1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
2	chr3:46549200-46585400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
4	chr3:46558400-46591000	Weak transcription	Gastric	stomach
5	chr3:46567200-46586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:46569000-46584200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:46571000-46583800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:46571600-46587000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:46578400-46599200	Weak transcription	HSMMtube	muscle
10	chr3:46578800-46586200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:46579200-46587800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:46579600-46584200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:46579800-46586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:46580200-46584400	Weak transcription	Placenta	Placenta
15	chr3:46580200-46586200	Weak transcription	Liver	Liver
16	chr3:46580600-46584400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:46580600-46584400	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:46580600-46584400	Weak transcription	Left Ventricle	heart
19	chr3:46580600-46586200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:46580800-46583600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:46580800-46586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:46581000-46583600	Weak transcription	NH-A	brain
23	chr3:46581000-46583800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:46581000-46583800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:46581000-46584400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:46581200-46583600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:46581200-46584000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:46581200-46584400	Enhancers	Primary B cells from peripheral blood	blood
29	chr3:46581200-46584400	Enhancers	Primary T cells fromperipheralblood	blood
30	chr3:46581200-46584800	Enhancers	Thymus	Thymus
31	chr3:46581200-46599200	Weak transcription	Fetal Heart	heart
32	chr3:46581400-46583600	Weak transcription	HUVEC	blood vessel
33	chr3:46581400-46583800	Weak transcription	Osteobl	bone
34	chr3:46581400-46584200	Enhancers	Primary B cells from cord blood	blood
35	chr3:46581400-46594400	Enhancers	Fetal Thymus	thymus
36	chr3:46581600-46583200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr3:46581600-46583200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:46581600-46583200	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:46581600-46583200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr3:46581600-46583400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr3:46581600-46583600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:46581600-46583600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:46581600-46583600	Weak transcription	NHDF-Ad	bronchial
44	chr3:46581600-46583800	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr3:46581600-46584400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:46581600-46584600	Enhancers	GM12878-XiMat	blood
47	chr3:46581600-46584800	Enhancers	Primary T cells from cord blood	blood
48	chr3:46581600-46584800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:46581600-46586000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:46581600-46591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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